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Results: 1 to 20 of 67

References for PMC Articles for PubMed (Select 19119416)

1.

Gene Ontology annotations at SGD: new data sources and annotation methods.

Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.

Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. Epub 2007 Nov 3.

2.

miRRim: a novel system to find conserved miRNAs with high sensitivity and specificity.

Terai G, Komori T, Asai K, Kin T.

RNA. 2007 Dec;13(12):2081-90. Epub 2007 Oct 24.

3.

SnoReport: computational identification of snoRNAs with unknown targets.

Hertel J, Hofacker IL, Stadler PF.

Bioinformatics. 2008 Jan 15;24(2):158-64. Epub 2007 Sep 25.

4.

Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.

Steigele S, Huber W, Stocsits C, Stadler PF, Nieselt K.

BMC Biol. 2007 Jun 18;5:25.

5.

A practical guide to the art of RNA gene prediction.

Meyer IM.

Brief Bioinform. 2007 Nov;8(6):396-414. Epub 2007 May 4. Review.

6.

Identification of small RNAs in diverse bacterial species.

Livny J, Waldor MK.

Curr Opin Microbiol. 2007 Apr;10(2):96-101. Epub 2007 Mar 23. Review.

PMID:
17383222
7.

Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA.

Freyhult EK, Bollback JP, Gardner PP.

Genome Res. 2007 Jan;17(1):117-25. Epub 2006 Dec 6.

8.

Non-coding RNAs: lost in translation?

Costa FF.

Gene. 2007 Jan 15;386(1-2):1-10. Epub 2006 Oct 10. Review.

PMID:
17113247
9.

A large-scale full-length cDNA analysis to explore the budding yeast transcriptome.

Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, Ito T.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17846-51. Epub 2006 Nov 13.

10.

Prediction of genomic functional elements.

Jones SJ.

Annu Rev Genomics Hum Genet. 2006;7:315-38. Review.

PMID:
16824019
11.

Non-coding RNA.

Mattick JS, Makunin IV.

Hum Mol Genet. 2006 Apr 15;15 Spec No 1:R17-29. Review.

12.

A high-resolution map of transcription in the yeast genome.

David L, Huber W, Granovskaia M, Toedling J, Palm CJ, Bofkin L, Jones T, Davis RW, Steinmetz LM.

Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5320-5. Epub 2006 Mar 28.

13.

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.

Samanta MP, Tongprasit W, Sethi H, Chin CS, Stolc V.

Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4192-7. Epub 2006 Mar 6.

14.

The expanding transcriptome: the genome as the 'Book of Sand'.

Mendes Soares LM, Valcárcel J.

EMBO J. 2006 Mar 8;25(5):923-31. Epub 2006 Mar 2. Review.

15.

Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae.

Kastenmayer JP, Ni L, Chu A, Kitchen LE, Au WC, Yang H, Carter CD, Wheeler D, Davis RW, Boeke JD, Snyder MA, Basrai MA.

Genome Res. 2006 Mar;16(3):365-73.

16.

Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts.

Sherman D, Durrens P, Iragne F, Beyne E, Nikolski M, Souciet JL.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D432-5.

17.

A comparison of RNA folding measures.

Freyhult E, Gardner PP, Moulton V.

BMC Bioinformatics. 2005 Oct 3;6:241.

18.
19.

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays.

Kapranov P, Drenkow J, Cheng J, Long J, Helt G, Dike S, Gingeras TR.

Genome Res. 2005 Jul;15(7):987-97.

20.

Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE.

Zhang Z, Dietrich FS.

Nucleic Acids Res. 2005 May 19;33(9):2838-51. Print 2005.

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