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References for PMC Articles for PubMed (Select 19064567)


Successful amplification of degraded DNA for use with high-throughput SNP genotyping platforms.

Mead S, Poulter M, Beck J, Uphill J, Jones C, Ang CE, Mein CA, Collinge J.

Hum Mutat. 2008 Dec;29(12):1452-8. doi: 10.1002/humu.20782.


Copy-number variation in control population cohorts.

Pinto D, Marshall C, Feuk L, Scherer SW.

Hum Mol Genet. 2007 Oct 15;16 Spec No. 2:R168-73. Review. Erratum in: Hum Mol Genet. 2008 Feb 1;17(3):166-7.


Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: implications for association studies of complex diseases.

de Smith AJ, Tsalenko A, Sampas N, Scheffer A, Yamada NA, Tsang P, Ben-Dor A, Yakhini Z, Ellis RJ, Bruhn L, Laderman S, Froguel P, Blakemore AI.

Hum Mol Genet. 2007 Dec 1;16(23):2783-94. Epub 2007 Jul 31.


Germ-line DNA copy number variation frequencies in a large North American population.

Zogopoulos G, Ha KC, Naqib F, Moore S, Kim H, Montpetit A, Robidoux F, Laflamme P, Cotterchio M, Greenwood C, Scherer SW, Zanke B, Hudson TJ, Bader GD, Gallinger S.

Hum Genet. 2007 Nov;122(3-4):345-53. Epub 2007 Jul 19.


Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation.

Arriola E, Lambros MB, Jones C, Dexter T, Mackay A, Tan DS, Tamber N, Fenwick K, Ashworth A, Dowsett M, Reis-Filho JS.

Lab Invest. 2007 Jan;87(1):75-83.


A comprehensive analysis of common copy-number variations in the human genome.

Wong KK, deLeeuw RJ, Dosanjh NS, Kimm LR, Cheng Z, Horsman DE, MacAulay C, Ng RT, Brown CJ, Eichler EE, Lam WL.

Am J Hum Genet. 2007 Jan;80(1):91-104. Epub 2006 Dec 5.


Global variation in copy number in the human genome.

Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, Andrews TD, Fiegler H, Shapero MH, Carson AR, Chen W, Cho EK, Dallaire S, Freeman JL, González JR, Gratacòs M, Huang J, Kalaitzopoulos D, Komura D, MacDonald JR, Marshall CR, Mei R, Montgomery L, Nishimura K, Okamura K, Shen F, Somerville MJ, Tchinda J, Valsesia A, Woodwark C, Yang F, Zhang J, Zerjal T, Zhang J, Armengol L, Conrad DF, Estivill X, Tyler-Smith C, Carter NP, Aburatani H, Lee C, Jones KW, Scherer SW, Hurles ME.

Nature. 2006 Nov 23;444(7118):444-54.


Genome-wide SNP assay reveals structural genomic variation, extended homozygosity and cell-line induced alterations in normal individuals.

Simon-Sanchez J, Scholz S, Fung HC, Matarin M, Hernandez D, Gibbs JR, Britton A, de Vrieze FW, Peckham E, Gwinn-Hardy K, Crawley A, Keen JC, Nash J, Borgaonkar D, Hardy J, Singleton A.

Hum Mol Genet. 2007 Jan 1;16(1):1-14. Epub 2006 Nov 20.


Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing.

Pinard R, de Winter A, Sarkis GJ, Gerstein MB, Tartaro KR, Plant RN, Egholm M, Rothberg JM, Leamon JH.

BMC Genomics. 2006 Aug 23;7:216.


Multiple displacement amplification to create a long-lasting source of DNA for genetic studies.

Lovmar L, Syvänen AC.

Hum Mutat. 2006 Jul;27(7):603-14. Review.


Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA.

Little SE, Vuononvirta R, Reis-Filho JS, Natrajan R, Iravani M, Fenwick K, Mackay A, Ashworth A, Pritchard-Jones K, Jones C.

Genomics. 2006 Feb;87(2):298-306. Epub 2005 Nov 2.


Estimation of the rate of SNP genotyping errors from DNA extracted from different tissues.

Montgomery GW, Campbell MJ, Dickson P, Herbert S, Siemering K, Ewen-White KR, Visscher PM, Martin NG.

Twin Res Hum Genet. 2005 Aug;8(4):346-52.


Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance.

Bergen AW, Qi Y, Haque KA, Welch RA, Chanock SJ.

BMC Biotechnol. 2005 Sep 16;5:24.


A high-density screen for linkage in multiple sclerosis.

Sawcer S, Ban M, Maranian M, Yeo TW, Compston A, Kirby A, Daly MJ, De Jager PL, Walsh E, Lander ES, Rioux JD, Hafler DA, Ivinson A, Rimmler J, Gregory SG, Schmidt S, Pericak-Vance MA, Akesson E, Hillert J, Datta P, Oturai A, Ryder LP, Harbo HF, Spurkland A, Myhr KM, Laaksonen M, Booth D, Heard R, Stewart G, Lincoln R, Barcellos LF, Hauser SL, Oksenberg JR, Kenealy SJ, Haines JL; International Multiple Sclerosis Genetics Consortium.

Am J Hum Genet. 2005 Sep;77(3):454-67. Epub 2005 Jul 29.


Detection of large-scale variation in the human genome.

Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, Scherer SW, Lee C.

Nat Genet. 2004 Sep;36(9):949-51. Epub 2004 Aug 1.


Investigating the utility of combining phi29 whole genome amplification and highly multiplexed single nucleotide polymorphism BeadArray genotyping.

Pask R, Rance HE, Barratt BJ, Nutland S, Smyth DJ, Sebastian M, Twells RC, Smith A, Lam AC, Smink LJ, Walker NM, Todd JA.

BMC Biotechnol. 2004 Jul 27;4:15.


The Breast Cancer Family Registry: an infrastructure for cooperative multinational, interdisciplinary and translational studies of the genetic epidemiology of breast cancer.

John EM, Hopper JL, Beck JC, Knight JA, Neuhausen SL, Senie RT, Ziogas A, Andrulis IL, Anton-Culver H, Boyd N, Buys SS, Daly MB, O'Malley FP, Santella RM, Southey MC, Venne VL, Venter DJ, West DW, Whittemore AS, Seminara D; Breast Cancer Family Registry.

Breast Cancer Res. 2004;6(4):R375-89. Epub 2004 May 19.


Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification.

Paez JG, Lin M, Beroukhim R, Lee JC, Zhao X, Richter DJ, Gabriel S, Herman P, Sasaki H, Altshuler D, Li C, Meyerson M, Sellers WR.

Nucleic Acids Res. 2004 May 18;32(9):e71.


Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel.

Barker DL, Hansen MS, Faruqi AF, Giannola D, Irsula OR, Lasken RS, Latterich M, Makarov V, Oliphant A, Pinter JH, Shen R, Sleptsova I, Ziehler W, Lai E.

Genome Res. 2004 May;14(5):901-7.


Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens.

Lasken RS, Egholm M.

Trends Biotechnol. 2003 Dec;21(12):531-5. Review. No abstract available.

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