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Items: 1 to 20 of 41

1.

The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.

Yarza P, Richter M, Peplies J, Euzeby J, Amann R, Schleifer KH, Ludwig W, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2008 Sep;31(4):241-50. doi: 10.1016/j.syapm.2008.07.001. Epub 2008 Aug 9.

PMID:
18692976
2.

A tree of life based on protein domain organizations.

Fukami-Kobayashi K, Minezaki Y, Tateno Y, Nishikawa K.

Mol Biol Evol. 2007 May;24(5):1181-9. Epub 2007 Mar 1.

3.

Determination of whole prokaryotic phylogeny by the development of a random extraction method.

Saruhashi S, Hamada K, Horiike T, Shinozawa T.

Gene. 2007 May 1;392(1-2):157-63. Epub 2006 Dec 12.

PMID:
17275216
4.

Toward automatic reconstruction of a highly resolved tree of life.

Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P.

Science. 2006 Mar 3;311(5765):1283-7. Erratum in: Science. 2006 May 5;312(5774):697.

5.

Genome trees and the nature of genome evolution.

Snel B, Huynen MA, Dutilh BE.

Annu Rev Microbiol. 2005;59:191-209. Review.

PMID:
16153168
6.

Maximum likelihood outperforms maximum parsimony even when evolutionary rates are heterotachous.

Gadagkar SR, Kumar S.

Mol Biol Evol. 2005 Nov;22(11):2139-41. Epub 2005 Jul 13.

7.

Phylogenomics and the reconstruction of the tree of life.

Delsuc F, Brinkmann H, Philippe H.

Nat Rev Genet. 2005 May;6(5):361-75. Review.

PMID:
15861208
8.
9.

Photosynthetic microbial mats in the 3,416-Myr-old ocean.

Tice MM, Lowe DR.

Nature. 2004 Sep 30;431(7008):549-52.

PMID:
15457255
10.

Clann: investigating phylogenetic information through supertree analyses.

Creevey CJ, McInerney JO.

Bioinformatics. 2005 Feb 1;21(3):390-2. Epub 2004 Sep 16.

11.

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

Dutilh BE, Huynen MA, Bruno WJ, Snel B.

J Mol Evol. 2004 May;58(5):527-39.

PMID:
15170256
12.

Whole-genome prokaryotic phylogeny.

Henz SR, Huson DH, Auch AF, Nieselt-Struwe K, Schuster SC.

Bioinformatics. 2005 May 15;21(10):2329-35. Epub 2004 May 27.

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15.

MBGD: microbial genome database for comparative analysis.

Uchiyama I.

Nucleic Acids Res. 2003 Jan 1;31(1):58-62.

16.

Genome trees and the tree of life.

Wolf YI, Rogozin IB, Grishin NV, Koonin EV.

Trends Genet. 2002 Sep;18(9):472-9. Review.

PMID:
12175808
17.

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Katoh K, Misawa K, Kuma K, Miyata T.

Nucleic Acids Res. 2002 Jul 15;30(14):3059-66.

18.
19.

Using homolog groups to create a whole-genomic tree of free-living organisms: an update.

House CH, Fitz-Gibbon ST.

J Mol Evol. 2002 Apr;54(4):539-47.

PMID:
11956692
20.

SHOT: a web server for the construction of genome phylogenies.

Korbel JO, Snel B, Huynen MA, Bork P.

Trends Genet. 2002 Mar;18(3):158-62.

PMID:
11858840
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