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Items: 1 to 20 of 42


A mitochondrial protein compendium elucidates complex I disease biology.

Pagliarini DJ, Calvo SE, Chang B, Sheth SA, Vafai SB, Ong SE, Walford GA, Sugiana C, Boneh A, Chen WK, Hill DE, Vidal M, Evans JG, Thorburn DR, Carr SA, Mootha VK.

Cell. 2008 Jul 11;134(1):112-23. doi: 10.1016/j.cell.2008.06.016.


Coherent coupling of feedback loops: a design principle of cell signaling networks.

Kwon YK, Cho KH.

Bioinformatics. 2008 Sep 1;24(17):1926-32. doi: 10.1093/bioinformatics/btn337. Epub 2008 Jul 2.


BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment.

Chin G Jr, Chavarria DG, Nakamura GC, Sofia HJ.

BMC Bioinformatics. 2008 May 28;9 Suppl 6:S6. doi: 10.1186/1471-2105-9-S6-S6.


Proximity of intracellular regulatory networks to monotone systems.

Ma'ayan A, Lipshtat A, Iyengar R, Sontag ED.

IET Syst Biol. 2008 May;2(3):103-12. doi: 10.1049/iet-syb:20070036.


Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth.

Bromberg KD, Ma'ayan A, Neves SR, Iyengar R.

Science. 2008 May 16;320(5878):903-9. doi: 10.1126/science.1152662.


Functions of bifans in context of multiple regulatory motifs in signaling networks.

Lipshtat A, Purushothaman SP, Iyengar R, Ma'ayan A.

Biophys J. 2008 Apr 1;94(7):2566-79. doi: 10.1529/biophysj.107.116673. Epub 2008 Jan 4.


Petri net-based method for the analysis of the dynamics of signal propagation in signaling pathways.

Hardy S, Robillard PN.

Bioinformatics. 2008 Jan 15;24(2):209-17. Epub 2007 Nov 22.


Drug-target network.

Yildirim MA, Goh KI, Cusick ME, Barabási AL, Vidal M.

Nat Biotechnol. 2007 Oct;25(10):1119-26.


Network analysis of FDA approved drugs and their targets.

Ma'ayan A, Jenkins SL, Goldfarb J, Iyengar R.

Mt Sinai J Med. 2007 Apr;74(1):27-32.


The human disease network.

Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabási AL.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):8685-90. Epub 2007 May 14.


Relating three-dimensional structures to protein networks provides evolutionary insights.

Kim PM, Lu LJ, Xia Y, Gerstein MB.

Science. 2006 Dec 22;314(5807):1938-41. Erratum in: Science. 2007 Jan 12;315(5809):187. Science. 2013 Feb 15;339(6121):757.


Topology of resultant networks shaped by evolutionary pressure.

Ma'ayan A, Lipshtat A, Iyengar R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jun;73(6 Pt 1):061912. Epub 2006 Jun 19.


Network motifs: structure does not determine function.

Ingram PJ, Stumpf MP, Stark J.

BMC Genomics. 2006 May 5;7:108.


Predicting interactions in protein networks by completing defective cliques.

Yu H, Paccanaro A, Trifonov V, Gerstein M.

Bioinformatics. 2006 Apr 1;22(7):823-9. Epub 2006 Feb 2.


Formation of regulatory patterns during signal propagation in a Mammalian cellular network.

Ma'ayan A, Jenkins SL, Neves S, Hasseldine A, Grace E, Dubin-Thaler B, Eungdamrong NJ, Weng G, Ram PT, Rice JJ, Kershenbaum A, Stolovitzky GA, Blitzer RD, Iyengar R.

Science. 2005 Aug 12;309(5737):1078-83.


Toward predictive models of mammalian cells.

Ma'ayan A, Blitzer RD, Iyengar R.

Annu Rev Biophys Biomol Struct. 2005;34:319-49. Review.


Causal protein-signaling networks derived from multiparameter single-cell data.

Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP.

Science. 2005 Apr 22;308(5721):523-9. Erratum in: Science. 2005 Aug 19;309(5738):1187.


A feedforward loop motif in transcriptional regulation: induction and repression.

Hayot F, Jayaprakash C.

J Theor Biol. 2005 May 7;234(1):133-43. Epub 2005 Jan 20.

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