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Results: 1 to 20 of 34

1.

Binding of MmeI restriction-modification enzyme to its specific recognition sequence is stimulated by S-adenosyl-L-methionine.

Nakonieczna J, Zmijewski JW, Banecki B, Podhajska AJ.

Mol Biotechnol. 2007 Oct;37(2):127-35.

PMID:
17914173
[PubMed - indexed for MEDLINE]
2.

Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.

Bennett-Lovsey RM, Herbert AD, Sternberg MJ, Kelley LA.

Proteins. 2008 Feb 15;70(3):611-25.

PMID:
17876813
[PubMed - indexed for MEDLINE]
3.

DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes.

Crampton N, Roes S, Dryden DT, Rao DN, Edwardson JM, Henderson RM.

EMBO J. 2007 Aug 22;26(16):3815-25. Epub 2007 Jul 26.

PMID:
17660745
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping.

Crampton N, Yokokawa M, Dryden DT, Edwardson JM, Rao DN, Takeyasu K, Yoshimura SH, Henderson RM.

Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12755-60. Epub 2007 Jul 23.

PMID:
17646654
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PROMALS: towards accurate multiple sequence alignments of distantly related proteins.

Pei J, Grishin NV.

Bioinformatics. 2007 Apr 1;23(7):802-8. Epub 2007 Jan 31.

PMID:
17267437
[PubMed - indexed for MEDLINE]
Free Article
6.

Restriction endonucleases that bridge and excise two recognition sites from DNA.

Marshall JJ, Gowers DM, Halford SE.

J Mol Biol. 2007 Mar 23;367(2):419-31. Epub 2007 Jan 3.

PMID:
17266985
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

REBASE--enzymes and genes for DNA restriction and modification.

Roberts RJ, Vincze T, Posfai J, Macelis D.

Nucleic Acids Res. 2007 Jan;35(Database issue):D269-70.

PMID:
17202163
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes.

Ng P, Tan JJ, Ooi HS, Lee YL, Chiu KP, Fullwood MJ, Srinivasan KG, Perbost C, Du L, Sung WK, Wei CL, Ruan Y.

Nucleic Acids Res. 2006 Jul 13;34(12):e84.

PMID:
16840528
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzyme.

Raghavendra NK, Rao DN.

Nucleic Acids Res. 2004 Oct 22;32(19):5703-11. Print 2004.

PMID:
15501920
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Purification and characterisation of a novel DNA methyltransferase, M.AhdI.

Marks P, McGeehan J, Wilson G, Errington N, Kneale G.

Nucleic Acids Res. 2003 Jun 1;31(11):2803-10.

PMID:
12771207
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.

Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SKh, Dryden DT, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Kr├╝ger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw PC, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JM, Wilson GG, Xu SY.

Nucleic Acids Res. 2003 Apr 1;31(7):1805-12.

PMID:
12654995
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Engineering of restriction endonucleases: using methylation activity of the bifunctional endonuclease Eco57I to select the mutant with a novel sequence specificity.

Rimseliene R, Maneliene Z, Lubys A, Janulaitis A.

J Mol Biol. 2003 Mar 21;327(2):383-91.

PMID:
12628245
[PubMed - indexed for MEDLINE]
13.

Using the transcriptome to annotate the genome.

Saha S, Sparks AB, Rago C, Akmaev V, Wang CJ, Vogelstein B, Kinzler KW, Velculescu VE.

Nat Biotechnol. 2002 May;20(5):508-12.

PMID:
11981567
[PubMed - indexed for MEDLINE]
14.

Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases.

Jeltsch A.

Chembiochem. 2002 Apr 2;3(4):274-93. Review. Erratum in: Chembiochem 2002 May 3;3(5):382.

PMID:
11933228
[PubMed - indexed for MEDLINE]
15.

Many type IIs restriction endonucleases interact with two recognition sites before cleaving DNA.

Bath AJ, Milsom SE, Gormley NA, Halford SE.

J Biol Chem. 2002 Feb 8;277(6):4024-33. Epub 2001 Nov 29.

PMID:
11729187
[PubMed - indexed for MEDLINE]
Free Article
16.

Structure and function of type II restriction endonucleases.

Pingoud A, Jeltsch A.

Nucleic Acids Res. 2001 Sep 15;29(18):3705-27. Review.

PMID:
11557805
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites.

Embleton ML, Siksnys V, Halford SE.

J Mol Biol. 2001 Aug 17;311(3):503-14.

PMID:
11493004
[PubMed - indexed for MEDLINE]
18.

FokI requires two specific DNA sites for cleavage.

Vanamee ES, Santagata S, Aggarwal AK.

J Mol Biol. 2001 May 25;309(1):69-78.

PMID:
11491302
[PubMed - indexed for MEDLINE]
19.

Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome.

Kong H, Lin LF, Porter N, Stickel S, Byrd D, Posfai J, Roberts RJ.

Nucleic Acids Res. 2000 Sep 1;28(17):3216-23.

PMID:
10954588
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Two intertwined methylation activities of the MmeI restriction-modification class-IIS system from Methylophilus methylotrophus.

Tucholski J, Zmijewski JW, Podhajska AJ.

Gene. 1998 Nov 26;223(1-2):293-302.

PMID:
9858752
[PubMed - indexed for MEDLINE]

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