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Results: 1 to 20 of 28

References for PMC Articles for PubMed (Select 18854817)

1.

Comprehensive transcriptional analysis of the oxidative response in yeast.

Molina-Navarro MM, Castells-Roca L, Bellí G, García-Martínez J, Marín-Navarro J, Moreno J, Pérez-Ortín JE, Herrero E.

J Biol Chem. 2008 Jun 27;283(26):17908-18. doi: 10.1074/jbc.M800295200. Epub 2008 Apr 17.

2.

Systematic functional characterization of cis-regulatory motifs in human core promoters.

Sinha S, Adler AS, Field Y, Chang HY, Segal E.

Genome Res. 2008 Mar;18(3):477-88. doi: 10.1101/gr.6828808. Epub 2008 Feb 6.

3.

Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana.

Narsai R, Howell KA, Millar AH, O'Toole N, Small I, Whelan J.

Plant Cell. 2007 Nov;19(11):3418-36. Epub 2007 Nov 16.

4.

The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms.

Lotan R, Goler-Baron V, Duek L, Haimovich G, Choder M.

J Cell Biol. 2007 Sep 24;178(7):1133-43. Epub 2007 Sep 17.

5.

Global and local architecture of the mammalian microRNA-transcription factor regulatory network.

Shalgi R, Lieber D, Oren M, Pilpel Y.

PLoS Comput Biol. 2007 Jul;3(7):e131.

6.

Genomics and gene transcription kinetics in yeast.

Pérez-Ortín JE, Alepuz PM, Moreno J.

Trends Genet. 2007 May;23(5):250-7. Epub 2007 Mar 26.

PMID:
17379352
7.

The highways and byways of mRNA decay.

Garneau NL, Wilusz J, Wilusz CJ.

Nat Rev Mol Cell Biol. 2007 Feb;8(2):113-26. Review.

PMID:
17245413
8.

A systems approach to mapping DNA damage response pathways.

Workman CT, Mak HC, McCuine S, Tagne JB, Agarwal M, Ozier O, Begley TJ, Samson LD, Ideker T.

Science. 2006 May 19;312(5776):1054-9.

9.

The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli.

Mangan S, Itzkovitz S, Zaslaver A, Alon U.

J Mol Biol. 2006 Mar 10;356(5):1073-81. Epub 2005 Dec 19.

PMID:
16406067
10.

The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs.

Lotan R, Bar-On VG, Harel-Sharvit L, Duek L, Melamed D, Choder M.

Genes Dev. 2005 Dec 15;19(24):3004-16.

11.

Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.

Foat BC, Houshmandi SS, Olivas WM, Bussemaker HJ.

Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17675-80. Epub 2005 Nov 29.

12.

A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs.

Shalgi R, Lapidot M, Shamir R, Pilpel Y.

Genome Biol. 2005;6(10):R86. Epub 2005 Sep 30.

13.

Bringing the role of mRNA decay in the control of gene expression into focus.

Wilusz CJ, Wilusz J.

Trends Genet. 2004 Oct;20(10):491-7. Review.

PMID:
15363903
14.

Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms.

García-Martínez J, Aranda A, Pérez-Ortín JE.

Mol Cell. 2004 Jul 23;15(2):303-13.

PMID:
15260981
15.
16.

The enzymes and control of eukaryotic mRNA turnover.

Parker R, Song H.

Nat Struct Mol Biol. 2004 Feb;11(2):121-7. Review.

PMID:
14749774
17.

Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes.

Yang E, van Nimwegen E, Zavolan M, Rajewsky N, Schroeder M, Magnasco M, Darnell JE Jr.

Genome Res. 2003 Aug;13(8):1863-72.

18.

Network motifs: simple building blocks of complex networks.

Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U.

Science. 2002 Oct 25;298(5594):824-7.

19.

The genomics of yeast responses to environmental stress and starvation.

Gasch AP, Werner-Washburne M.

Funct Integr Genomics. 2002 Sep;2(4-5):181-92. Epub 2002 Apr 30. Review.

PMID:
12192591
20.

Global analysis of stress-regulated mRNA turnover by using cDNA arrays.

Fan J, Yang X, Wang W, Wood WH 3rd, Becker KG, Gorospe M.

Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10611-6. Epub 2002 Jul 29.

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