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Results: 1 to 20 of 29

1.

EMAAS: an extensible grid-based rich internet application for microarray data analysis and management.

Barton G, Abbott J, Chiba N, Huang DW, Huang Y, Krznaric M, Mack-Smith J, Saleem A, Sherman BT, Tiwari B, Tomlinson C, Aitman T, Darlington J, Game L, Sternberg MJ, Butcher SA.

BMC Bioinformatics. 2008 Nov 25;9:493. doi: 10.1186/1471-2105-9-493.

PMID:
19032776
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The MGED ontology: a framework for describing functional genomics experiments.

Stoeckert CJ Jr, Parkinson H.

Comp Funct Genomics. 2003;4(1):127-32. doi: 10.1002/cfg.234.

PMID:
18629093
[PubMed]
Free PMC Article
3.

Research ethics and the challenge of whole-genome sequencing.

McGuire AL, Caulfield T, Cho MK.

Nat Rev Genet. 2008 Feb;9(2):152-6.

PMID:
18087293
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours.

Draghici S, Tarca AL, Yu L, Ethier S, Romero R.

Bioinformatics. 2008 Mar 1;24(5):738-40. Epub 2007 Nov 17.

PMID:
18024967
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

PMID:
17980028
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Medicine. The future of personal genomics.

McGuire AL, Cho MK, McGuire SE, Caulfield T.

Science. 2007 Sep 21;317(5845):1687. No abstract available.

PMID:
17885116
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Celsius: a community resource for Affymetrix microarray data.

Day A, Carlson MR, Dong J, O'Connor BD, Nelson SF.

Genome Biol. 2007;8(6):R112.

PMID:
17570842
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The genopolis microarray database.

Splendiani A, Brandizi M, Even G, Beretta O, Pavelka N, Pelizzola M, Mayhaus M, Foti M, Mauri G, Ricciardi-Castagnoli P.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S21.

PMID:
17430566
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Mediante: a web-based microarray data manager.

Le Brigand K, Barbry P.

Bioinformatics. 2007 May 15;23(10):1304-6. Epub 2007 Mar 23.

PMID:
17384016
[PubMed - indexed for MEDLINE]
Free Article
10.

The Stanford Microarray Database: implementation of new analysis tools and open source release of software.

Demeter J, Beauheim C, Gollub J, Hernandez-Boussard T, Jin H, Maier D, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G, Ball CA.

Nucleic Acids Res. 2007 Jan;35(Database issue):D766-70. Epub 2006 Dec 20.

PMID:
17182626
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

ArrayExpress--a public database of microarray experiments and gene expression profiles.

Parkinson H, Kapushesky M, Shojatalab M, Abeygunawardena N, Coulson R, Farne A, Holloway E, Kolesnykov N, Lilja P, Lukk M, Mani R, Rayner T, Sharma A, William E, Sarkans U, Brazma A.

Nucleic Acids Res. 2007 Jan;35(Database issue):D747-50. Epub 2006 Nov 28.

PMID:
17132828
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The mouse Gene Expression Database (GXD): 2007 update.

Smith CM, Finger JH, Hayamizu TF, McCright IJ, Eppig JT, Kadin JA, Richardson JE, Ringwald M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D618-23. Epub 2006 Nov 27.

PMID:
17130151
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Arrays of hope.

Strauss E.

Cell. 2006 Nov 17;127(4):657-9.

PMID:
17110319
[PubMed - indexed for MEDLINE]
Free Article
14.

NCBI GEO: mining tens of millions of expression profiles--database and tools update.

Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5. Epub 2006 Nov 11.

PMID:
17099226
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Lack of correct data format and comparability limits future integrative microarray research.

Larsson O, Sandberg R.

Nat Biotechnol. 2006 Nov;24(11):1322-3. No abstract available.

PMID:
17093466
[PubMed - indexed for MEDLINE]
16.

Gene Aging Nexus: a web database and data mining platform for microarray data on aging.

Pan F, Chiu CH, Pulapura S, Mehan MR, Nunez-Iglesias J, Zhang K, Kamath K, Waterman MS, Finch CE, Zhou XJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D756-9. Epub 2006 Nov 7.

PMID:
17090592
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A.

BMC Bioinformatics. 2006 Nov 6;7:489.

PMID:
17087822
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.

Mazzarelli JM, Brestelli J, Gorski RK, Liu J, Manduchi E, Pinney DF, Schug J, White P, Kaestner KH, Stoeckert CJ Jr.

Nucleic Acids Res. 2007 Jan;35(Database issue):D751-5. Epub 2006 Oct 27.

PMID:
17071715
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Technology Insight: tuning into the genetic orchestra using microarrays--limitations of DNA microarrays in clinical practice.

Abdullah-Sayani A, Bueno-de-Mesquita JM, van de Vijver MJ.

Nat Clin Pract Oncol. 2006 Sep;3(9):501-16. Review.

PMID:
16955089
[PubMed - indexed for MEDLINE]
20.

SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology.

Marzolf B, Deutsch EW, Moss P, Campbell D, Johnson MH, Galitski T.

BMC Bioinformatics. 2006 Jun 6;7:286.

PMID:
16756676
[PubMed - indexed for MEDLINE]
Free PMC Article

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