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Items: 1 to 20 of 32


Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil.

Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB.

Appl Environ Microbiol. 2007 Nov;73(21):7059-66. Epub 2007 Sep 7.


Characterization of a latent virus-like infection of symbiotic zooxanthellae.

Lohr J, Munn CB, Wilson WH.

Appl Environ Microbiol. 2007 May;73(9):2976-81. Epub 2007 Mar 9.


The coral probiotic hypothesis.

Reshef L, Koren O, Loya Y, Zilber-Rosenberg I, Rosenberg E.

Environ Microbiol. 2006 Dec;8(12):2068-73.


The marine viromes of four oceanic regions.

Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F.

PLoS Biol. 2006 Nov;4(11):e368.


UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context.

Lozupone C, Hamady M, Knight R.

BMC Bioinformatics. 2006 Aug 7;7:371.


Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts.

Sullivan MB, Lindell D, Lee JA, Thompson LR, Bielawski JP, Chisholm SW.

PLoS Biol. 2006 Jul;4(8):e234.


Viruses: agents of coral disease?

Davy SK, Burchett SG, Dale AL, Davies P, Davy JE, Muncke C, Hoegh-Guldberg O, Wilson WH.

Dis Aquat Organ. 2006 Mar 23;69(1):101-10.


Viruses of symbiotic Chlorella-like algae isolated from Paramecium bursaria and Hydra viridis.

Van Etten JL, Meints RH, Kuczmarski D, Burbank DE, Lee K.

Proc Natl Acad Sci U S A. 1982 Jun;79(12):3867-71.


Topics in herpesvirus genomics and evolution.

McGeoch DJ, Rixon FJ, Davison AJ.

Virus Res. 2006 Apr;117(1):90-104. Epub 2006 Feb 21. Review.


FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries.

Yu Y, Breitbart M, McNairnie P, Rohwer F.

BMC Bioinformatics. 2006 Feb 7;7:57.


RNA viral community in human feces: prevalence of plant pathogenic viruses.

Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SW, Hibberd ML, Liu ET, Rohwer F, Ruan Y.

PLoS Biol. 2006 Jan;4(1):e3.


UniFrac: a new phylogenetic method for comparing microbial communities.

Lozupone C, Knight R.

Appl Environ Microbiol. 2005 Dec;71(12):8228-35.


The players in a mutualistic symbiosis: insects, bacteria, viruses, and virulence genes.

Moran NA, Degnan PH, Santos SR, Dunbar HE, Ochman H.

Proc Natl Acad Sci U S A. 2005 Nov 22;102(47):16919-26. Epub 2005 Sep 29.


PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.

Angly F, Rodriguez-Brito B, Bangor D, McNairnie P, Breitbart M, Salamon P, Felts B, Nulton J, Mahaffy J, Rohwer F.

BMC Bioinformatics. 2005 Mar 2;6:41.


Discovery of symbiotic nitrogen-fixing cyanobacteria in corals.

Lesser MP, Mazel CH, Gorbunov MY, Falkowski PG.

Science. 2004 Aug 13;305(5686):997-1000.


Diversity and population structure of a near-shore marine-sediment viral community.

Breitbart M, Felts B, Kelley S, Mahaffy JM, Nulton J, Salamon P, Rohwer F.

Proc Biol Sci. 2004 Mar 22;271(1539):565-74.


Using the TIGR assembler in shotgun sequencing projects.

Pop M, Kosack D.

Methods Mol Biol. 2004;255:279-94. No abstract available.


Multispecies microbial mutualisms on coral reefs: the host as a habitat.

Knowlton N, Rohwer F.

Am Nat. 2003 Oct;162(4 Suppl):S51-62. Review.


Metagenomic analyses of an uncultured viral community from human feces.

Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, Salamon P, Rohwer F.

J Bacteriol. 2003 Oct;185(20):6220-3.

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