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Results: 1 to 20 of 63

1.

The origin and evolution of tRNA inferred from phylogenetic analysis of structure.

Sun FJ, Caetano-Anollés G.

J Mol Evol. 2008 Jan;66(1):21-35. Epub 2007 Dec 4.

PMID:
18058157
[PubMed - indexed for MEDLINE]
2.

Signature of a primitive genetic code in ancient protein lineages.

Fournier GP, Gogarten JP.

J Mol Evol. 2007 Oct;65(4):425-36. Epub 2007 Oct 6.

PMID:
17922074
[PubMed - indexed for MEDLINE]
3.

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world.

Wang M, Yafremava LS, Caetano-Anollés D, Mittenthal JE, Caetano-Anollés G.

Genome Res. 2007 Nov;17(11):1572-85. Epub 2007 Oct 1.

PMID:
17908824
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Polyphasic evidence delineating the root of life and roots of biological domains.

Wong JT, Chen J, Mat WK, Ng SK, Xue H.

Gene. 2007 Nov 15;403(1-2):39-52. Epub 2007 Aug 23.

PMID:
17884304
[PubMed - indexed for MEDLINE]
5.

The evolutionary genetics of viral emergence.

Holmes EC, Drummond AJ.

Curr Top Microbiol Immunol. 2007;315:51-66. Review.

PMID:
17848060
[PubMed - indexed for MEDLINE]
6.

The Biological Big Bang model for the major transitions in evolution.

Koonin EV.

Biol Direct. 2007 Aug 20;2:21.

PMID:
17708768
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Common evolutionary trends for SINE RNA structures.

Sun FJ, Fleurdépine S, Bousquet-Antonelli C, Caetano-Anollés G, Deragon JM.

Trends Genet. 2007 Jan;23(1):26-33. Epub 2006 Nov 28.

PMID:
17126948
[PubMed - indexed for MEDLINE]
8.

Viruses of the Archaea: a unifying view.

Prangishvili D, Forterre P, Garrett RA.

Nat Rev Microbiol. 2006 Nov;4(11):837-48. Review.

PMID:
17041631
[PubMed - indexed for MEDLINE]
9.

The ancient Virus World and evolution of cells.

Koonin EV, Senkevich TG, Dolja VV.

Biol Direct. 2006 Sep 19;1:29.

PMID:
16984643
[PubMed]
Free PMC Article
10.

Structure of the 70S ribosome complexed with mRNA and tRNA.

Selmer M, Dunham CM, Murphy FV 4th, Weixlbaumer A, Petry S, Kelley AC, Weir JR, Ramakrishnan V.

Science. 2006 Sep 29;313(5795):1935-42. Epub 2006 Sep 7.

PMID:
16959973
[PubMed - indexed for MEDLINE]
Free Article
11.

MANET: tracing evolution of protein architecture in metabolic networks.

Kim HS, Mittenthal JE, Caetano-Anollés G.

BMC Bioinformatics. 2006 Jul 19;7:351.

PMID:
16854231
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: a hypothesis for the origin of cellular domain.

Forterre P.

Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3669-74. Epub 2006 Feb 27.

PMID:
16505372
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells.

Forterre P.

Biochimie. 2005 Sep-Oct;87(9-10):793-803. Epub 2005 Apr 12.

PMID:
16164990
[PubMed - indexed for MEDLINE]
14.

tRNA creation by hairpin duplication.

Widmann J, Di Giulio M, Yarus M, Knight R.

J Mol Evol. 2005 Oct;61(4):524-30. Epub 2005 Sep 12.

PMID:
16155749
[PubMed - indexed for MEDLINE]
15.

Congruence of evidence for a Methanopyrus-proximal root of life based on transfer RNA and aminoacyl-tRNA synthetase genes.

Xue H, Ng SK, Tong KL, Wong JT.

Gene. 2005 Nov 7;360(2):120-30. Epub 2005 Sep 8.

PMID:
16153784
[PubMed - indexed for MEDLINE]
16.

Grass evolution inferred from chromosomal rearrangements and geometrical and statistical features in RNA structure.

Caetano-Anollés G.

J Mol Evol. 2005 May;60(5):635-52.

PMID:
15983872
[PubMed - indexed for MEDLINE]
17.

Evolutionary aspects of whole-genome biology.

Doolittle RF.

Curr Opin Struct Biol. 2005 Jun;15(3):248-53. Review.

PMID:
15963888
[PubMed - indexed for MEDLINE]
18.

Phylogenomics and the reconstruction of the tree of life.

Delsuc F, Brinkmann H, Philippe H.

Nat Rev Genet. 2005 May;6(5):361-75. Review.

PMID:
15861208
[PubMed - indexed for MEDLINE]
19.

A universal trend of amino acid gain and loss in protein evolution.

Jordan IK, Kondrashov FA, Adzhubei IA, Wolf YI, Koonin EV, Kondrashov AS, Sunyaev S.

Nature. 2005 Feb 10;433(7026):633-8. Epub 2005 Jan 19. Erratum in: Nature. 2005 May 26;435(7041):528.

PMID:
15660107
[PubMed - indexed for MEDLINE]
20.

Compilation of tRNA sequences and sequences of tRNA genes.

Sprinzl M, Vassilenko KS.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D139-40.

PMID:
15608164
[PubMed - indexed for MEDLINE]
Free PMC Article

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