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Results: 1 to 20 of 33

1.

Mapping the human proteome using antibodies.

Uhlen M.

Mol Cell Proteomics. 2007 Aug;6(8):1455-6. No abstract available.

PMID:
17703056
[PubMed - indexed for MEDLINE]
Free Article
2.

Using Grid technology for computationally intensive applied bioinformatics analyses.

Andrade J, Berglund L, Uhlén M, Odeberg J.

In Silico Biol. 2006;6(6):495-504.

PMID:
17518760
[PubMed - indexed for MEDLINE]
3.

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools.

Greenbaum JA, Andersen PH, Blythe M, Bui HH, Cachau RE, Crowe J, Davies M, Kolaskar AS, Lund O, Morrison S, Mumey B, Ofran Y, Pellequer JL, Pinilla C, Ponomarenko JV, Raghava GP, van Regenmortel MH, Roggen EL, Sette A, Schlessinger A, Sollner J, Zand M, Peters B.

J Mol Recognit. 2007 Mar-Apr;20(2):75-82. Review.

PMID:
17205610
[PubMed - indexed for MEDLINE]
4.

Ensembl 2007.

Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K, Howe K, Johnson N, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Melsopp C, Megy K, Meidl P, Ouverdin B, Parker A, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Severin J, Slater G, Smedley D, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wood M, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Flicek P, Kasprzyk A, Proctor G, Searle S, Smith J, Ureta-Vidal A, Birney E.

Nucleic Acids Res. 2007 Jan;35(Database issue):D610-7. Epub 2006 Dec 5.

PMID:
17148474
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Prediction of residues in discontinuous B-cell epitopes using protein 3D structures.

Haste Andersen P, Nielsen M, Lund O.

Protein Sci. 2006 Nov;15(11):2558-67. Epub 2006 Sep 25.

PMID:
17001032
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Immunoinformatics may lead to a reappraisal of the nature of B cell epitopes and of the feasibility of synthetic peptide vaccines.

Van Regenmortel MH.

J Mol Recognit. 2006 May-Jun;19(3):183-7. No abstract available.

PMID:
16680720
[PubMed - indexed for MEDLINE]
7.

A human protein atlas for normal and cancer tissues based on antibody proteomics.

Uhlén M, Björling E, Agaton C, Szigyarto CA, Amini B, Andersen E, Andersson AC, Angelidou P, Asplund A, Asplund C, Berglund L, Bergström K, Brumer H, Cerjan D, Ekström M, Elobeid A, Eriksson C, Fagerberg L, Falk R, Fall J, Forsberg M, Björklund MG, Gumbel K, Halimi A, Hallin I, Hamsten C, Hansson M, Hedhammar M, Hercules G, Kampf C, Larsson K, Lindskog M, Lodewyckx W, Lund J, Lundeberg J, Magnusson K, Malm E, Nilsson P, Odling J, Oksvold P, Olsson I, Oster E, Ottosson J, Paavilainen L, Persson A, Rimini R, Rockberg J, Runeson M, Sivertsson A, Sköllermo A, Steen J, Stenvall M, Sterky F, Strömberg S, Sundberg M, Tegel H, Tourle S, Wahlund E, Waldén A, Wan J, Wernérus H, Westberg J, Wester K, Wrethagen U, Xu LL, Hober S, Pontén F.

Mol Cell Proteomics. 2005 Dec;4(12):1920-32. Epub 2005 Aug 27.

PMID:
16127175
[PubMed - indexed for MEDLINE]
Free Article
8.

Selection of protein epitopes for antibody production.

Lindskog M, Rockberg J, Uhlén M, Sterky F.

Biotechniques. 2005 May;38(5):723-7.

PMID:
15945371
[PubMed - indexed for MEDLINE]
Free Article
9.

Antibody-based proteomics for human tissue profiling.

Uhlen M, Ponten F.

Mol Cell Proteomics. 2005 Apr;4(4):384-93. Epub 2005 Feb 5. Review.

PMID:
15695805
[PubMed - indexed for MEDLINE]
Free Article
10.

Benchmarking B cell epitope prediction: underperformance of existing methods.

Blythe MJ, Flower DR.

Protein Sci. 2005 Jan;14(1):246-8. Epub 2004 Dec 2.

PMID:
15576553
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Finishing the euchromatic sequence of the human genome.

International Human Genome Sequencing Consortium.

Nature. 2004 Oct 21;431(7011):931-45.

PMID:
15496913
[PubMed - indexed for MEDLINE]
12.

Structural basis of peptide-carbohydrate mimicry in an antibody-combining site.

Vyas NK, Vyas MN, Chervenak MC, Bundle DR, Pinto BM, Quiocho FA.

Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):15023-8. Epub 2003 Nov 25.

PMID:
14645714
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Structure of the extracellular region of HER2 alone and in complex with the Herceptin Fab.

Cho HS, Mason K, Ramyar KX, Stanley AM, Gabelli SB, Denney DW Jr, Leahy DJ.

Nature. 2003 Feb 13;421(6924):756-60.

PMID:
12610629
[PubMed - indexed for MEDLINE]
14.

Antibody multispecificity mediated by conformational diversity.

James LC, Roversi P, Tawfik DS.

Science. 2003 Feb 28;299(5611):1362-7.

PMID:
12610298
[PubMed - indexed for MEDLINE]
Free Article
15.

BEPITOPE: predicting the location of continuous epitopes and patterns in proteins.

Odorico M, Pellequer JL.

J Mol Recognit. 2003 Jan-Feb;16(1):20-2.

PMID:
12557235
[PubMed - indexed for MEDLINE]
16.

The human plasma proteome: history, character, and diagnostic prospects.

Anderson NL, Anderson NG.

Mol Cell Proteomics. 2002 Nov;1(11):845-67. Review. Erratum in: Mol Cell Proteomics. 2003 Jan;2(1):50.

PMID:
12488461
[PubMed - indexed for MEDLINE]
Free Article
17.

Structural evidence for recognition of a single epitope by two distinct antibodies.

Fleury D, Daniels RS, Skehel JJ, Knossow M, Bizebard T.

Proteins. 2000 Sep 1;40(4):572-8.

PMID:
10899782
[PubMed - indexed for MEDLINE]
18.

Predictive estimation of protein linear epitopes by using the program PEOPLE.

Alix AJ.

Vaccine. 1999 Sep;18(3-4):311-4.

PMID:
10506656
[PubMed - indexed for MEDLINE]
19.

Fine mapping of the binding sites of monoclonal antibodies raised against the Pk tag.

Dunn C, O'Dowd A, Randall RE.

J Immunol Methods. 1999 Apr 22;224(1-2):141-50.

PMID:
10357214
[PubMed - indexed for MEDLINE]
20.

Determination and analysis of antigenic epitopes of prostate specific antigen (PSA) and human glandular kallikrein 2 (hK2) using synthetic peptides and computer modeling.

Piironen T, Villoutreix BO, Becker C, Hollingsworth K, Vihinen M, Bridon D, Qiu X, Rapp J, Dowell B, Lövgren T, Pettersson K, Lilja H.

Protein Sci. 1998 Feb;7(2):259-69.

PMID:
9521101
[PubMed - indexed for MEDLINE]
Free PMC Article

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