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Results: 1 to 20 of 30

1.

A human phenome-interactome network of protein complexes implicated in genetic disorders.

Lage K, Karlberg EO, Størling ZM, Olason PI, Pedersen AG, Rigina O, Hinsby AM, Tümer Z, Pociot F, Tommerup N, Moreau Y, Brunak S.

Nat Biotechnol. 2007 Mar;25(3):309-16.

PMID:
17344885
[PubMed - indexed for MEDLINE]
2.

Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia.

Mullighan CG, Goorha S, Radtke I, Miller CB, Coustan-Smith E, Dalton JD, Girtman K, Mathew S, Ma J, Pounds SB, Su X, Pui CH, Relling MV, Evans WE, Shurtleff SA, Downing JR.

Nature. 2007 Apr 12;446(7137):758-64.

PMID:
17344859
[PubMed - indexed for MEDLINE]
3.

A network biology approach to prostate cancer.

Ergün A, Lawrence CA, Kohanski MA, Brennan TA, Collins JJ.

Mol Syst Biol. 2007;3:82. Epub 2007 Feb 13.

PMID:
17299418
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Molecular pathways in follicular lymphoma.

Bende RJ, Smit LA, van Noesel CJ.

Leukemia. 2007 Jan;21(1):18-29. Epub 2006 Oct 12. Review.

PMID:
17039231
[PubMed - indexed for MEDLINE]
5.

The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.

Lamb J, Crawford ED, Peck D, Modell JW, Blat IC, Wrobel MJ, Lerner J, Brunet JP, Subramanian A, Ross KN, Reich M, Hieronymus H, Wei G, Armstrong SA, Haggarty SJ, Clemons PA, Wei R, Carr SA, Lander ES, Golub TR.

Science. 2006 Sep 29;313(5795):1929-35.

PMID:
17008526
[PubMed - indexed for MEDLINE]
Free Article
6.

ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.

Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A.

BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S7.

PMID:
16723010
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression.

Yao J, Weremowicz S, Feng B, Gentleman RC, Marks JR, Gelman R, Brennan C, Polyak K.

Cancer Res. 2006 Apr 15;66(8):4065-78.

PMID:
16618726
[PubMed - indexed for MEDLINE]
Free Article
8.

Burkitt t(8;14)(q24;q32) and cryptic deletion in a CLL patient: report of a case and review of literature.

Reddy K, Satyadev R, Bouman D, Hibbard MK, Lu G, Paolo R.

Cancer Genet Cytogenet. 2006 Apr 1;166(1):12-21.

PMID:
16616107
[PubMed - indexed for MEDLINE]
9.

Genetic regulators of large-scale transcriptional signatures in cancer.

Adler AS, Lin M, Horlings H, Nuyten DS, van de Vijver MJ, Chang HY.

Nat Genet. 2006 Apr;38(4):421-30. Epub 2006 Mar 5.

PMID:
16518402
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Cancer biology: signatures guide drug choice.

Downward J.

Nature. 2006 Jan 19;439(7074):274-5. No abstract available.

PMID:
16421553
[PubMed - indexed for MEDLINE]
11.

From genomics to chemical genomics: new developments in KEGG.

Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D354-7.

PMID:
16381885
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Histone deacetylase inhibitors reduce VEGF production and induce growth suppression and apoptosis in human mantle cell lymphoma.

Heider U, Kaiser M, Sterz J, Zavrski I, Jakob C, Fleissner C, Eucker J, Possinger K, Sezer O.

Eur J Haematol. 2006 Jan;76(1):42-50.

PMID:
16343270
[PubMed - indexed for MEDLINE]
13.

Oncogenic pathway signatures in human cancers as a guide to targeted therapies.

Bild AH, Yao G, Chang JT, Wang Q, Potti A, Chasse D, Joshi MB, Harpole D, Lancaster JM, Berchuck A, Olson JA Jr, Marks JR, Dressman HK, West M, Nevins JR.

Nature. 2006 Jan 19;439(7074):353-7. Epub 2005 Nov 6.

PMID:
16273092
[PubMed - indexed for MEDLINE]
14.

Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

Tomlins SA, Rhodes DR, Perner S, Dhanasekaran SM, Mehra R, Sun XW, Varambally S, Cao X, Tchinda J, Kuefer R, Lee C, Montie JE, Shah RB, Pienta KJ, Rubin MA, Chinnaiyan AM.

Science. 2005 Oct 28;310(5748):644-8.

PMID:
16254181
[PubMed - indexed for MEDLINE]
Free Article
15.

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP.

Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50. Epub 2005 Sep 30.

PMID:
16199517
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Metastasis-associated protein 1 (MTA1) is an essential downstream effector of the c-MYC oncoprotein.

Zhang XY, DeSalle LM, Patel JH, Capobianco AJ, Yu D, Thomas-Tikhonenko A, McMahon SB.

Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13968-73. Epub 2005 Sep 19.

PMID:
16172399
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks.

di Bernardo D, Thompson MJ, Gardner TS, Chobot SE, Eastwood EL, Wojtovich AP, Elliott SJ, Schaus SE, Collins JJ.

Nat Biotechnol. 2005 Mar;23(3):377-83.

PMID:
15765094
[PubMed - indexed for MEDLINE]
18.

TGFbeta-mediated activation of Smad1 in B-cell non-Hodgkin's lymphoma and effect on cell proliferation.

Munoz O, Fend F, de Beaumont R, Husson H, Astier A, Freedman AS.

Leukemia. 2004 Dec;18(12):2015-25.

PMID:
15470494
[PubMed - indexed for MEDLINE]
19.

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.

Rzhetsky A, Iossifov I, Koike T, Krauthammer M, Kra P, Morris M, Yu H, Duboué PA, Weng W, Wilbur WJ, Hatzivassiloglou V, Friedman C.

J Biomed Inform. 2004 Feb;37(1):43-53.

PMID:
15016385
[PubMed - indexed for MEDLINE]
Free Article
20.

Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T.

Genome Res. 2003 Nov;13(11):2498-504.

PMID:
14597658
[PubMed - indexed for MEDLINE]
Free PMC Article

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