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Results: 1 to 20 of 26

References for PMC Articles for PubMed (Select 18056084)

1.

Schistosoma mansoni genome: closing in on a final gene set.

Haas BJ, Berriman M, Hirai H, Cerqueira GG, Loverde PT, El-Sayed NM.

Exp Parasitol. 2007 Nov;117(3):225-8. Epub 2007 Jun 21. Review.

PMID:
17643433
2.

The human phylome.

Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T.

Genome Biol. 2007;8(6):R109.

3.

Database resources of the National Center for Biotechnology Information.

Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Geer LY, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Ostell J, Miller V, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E.

Nucleic Acids Res. 2007 Jan;35(Database issue):D5-12. Epub 2006 Dec 14.

4.

Ensembl 2007.

Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K, Howe K, Johnson N, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Melsopp C, Megy K, Meidl P, Ouverdin B, Parker A, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Severin J, Slater G, Smedley D, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wood M, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Flicek P, Kasprzyk A, Proctor G, Searle S, Smith J, Ureta-Vidal A, Birney E.

Nucleic Acids Res. 2007 Jan;35(Database issue):D610-7. Epub 2006 Dec 5.

5.

The UCSC genome browser database: update 2007.

Kuhn RM, Karolchik D, Zweig AS, Trumbower H, Thomas DJ, Thakkapallayil A, Sugnet CW, Stanke M, Smith KE, Siepel A, Rosenbloom KR, Rhead B, Raney BJ, Pohl A, Pedersen JS, Hsu F, Hinrichs AS, Harte RA, Diekhans M, Clawson H, Bejerano G, Barber GP, Baertsch R, Haussler D, Kent WJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D668-73. Epub 2006 Nov 16.

6.

PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.

Mi H, Guo N, Kejariwal A, Thomas PD.

Nucleic Acids Res. 2007 Jan;35(Database issue):D247-52. Epub 2006 Nov 27.

7.

WormBase: new content and better access.

Bieri T, Blasiar D, Ozersky P, Antoshechkin I, Bastiani C, Canaran P, Chan J, Chen N, Chen WJ, Davis P, Fiedler TJ, Girard L, Han M, Harris TW, Kishore R, Lee R, McKay S, Müller HM, Nakamura C, Petcherski A, Rangarajan A, Rogers A, Schindelman G, Schwarz EM, Spooner W, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Durbin R, Stein LD, Sternberg PW, Spieth J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D506-10. Epub 2006 Nov 11.

8.

FlyBase: genomes by the dozen.

Crosby MA, Goodman JL, Strelets VB, Zhang P, Gelbart WM; FlyBase Consortium.

Nucleic Acids Res. 2007 Jan;35(Database issue):D486-91. Epub 2006 Nov 11.

9.
10.

Functional classification using phylogenomic inference.

Brown D, Sjölander K.

PLoS Comput Biol. 2006 Jun 30;2(6):e77. Review. No abstract available.

11.
12.

TreeFam: a curated database of phylogenetic trees of animal gene families.

Li H, Coghlan A, Ruan J, Coin LJ, Hériché JK, Osmotherly L, Li R, Liu T, Zhang Z, Bolund L, Wong GK, Zheng W, Dehal P, Wang J, Durbin R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D572-80.

13.

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.

Chen F, Mackey AJ, Stoeckert CJ Jr, Roos DS.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D363-8.

14.

The Universal Protein Resource (UniProt): an expanding universe of protein information.

Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, Suzek B.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D187-91.

15.

Orthologs, paralogs, and evolutionary genomics.

Koonin EV.

Annu Rev Genet. 2005;39:309-38. Review.

PMID:
16285863
16.

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.

Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith RK Jr, Maiti R, Chan AP, Yu C, Farzad M, Wu D, White O, Town CD.

BMC Biol. 2005 Mar 22;3:7.

17.

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perrière G.

Bioinformatics. 2005 Jun 1;21(11):2596-603. Epub 2005 Feb 15.

18.

Inparanoid: a comprehensive database of eukaryotic orthologs.

O'Brien KP, Remm M, Sonnhammer EL.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D476-80.

19.

The SYSTERS Protein Family Database in 2005.

Meinel T, Krause A, Luz H, Vingron M, Staub E.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D226-9.

20.
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