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Results: 1 to 20 of 21

References for PMC Articles for PubMed (Select 17854504)

1.

Impact of RNA degradation on gene expression profiles: assessment of different methods to reliably determine RNA quality.

Copois V, Bibeau F, Bascoul-Mollevi C, Salvetat N, Chalbos P, Bareil C, Candeil L, Fraslon C, Conseiller E, Granci V, Mazière P, Kramar A, Ychou M, Pau B, Martineau P, Molina F, Del Rio M.

J Biotechnol. 2007 Jan 20;127(4):549-59. Epub 2006 Aug 2.

PMID:
16945445
2.

Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data.

Jones L, Goldstein DR, Hughes G, Strand AD, Collin F, Dunnett SB, Kooperberg C, Aragaki A, Olson JM, Augood SJ, Faull RL, Luthi-Carter R, Moskvina V, Hodges AK.

BMC Bioinformatics. 2006 Apr 19;7:211.

3.

Biologically relevant effects of mRNA amplification on gene expression profiles.

van Haaften RI, Schroen B, Janssen BJ, van Erk A, Debets JJ, Smeets HJ, Smits JF, van den Wijngaard A, Pinto YM, Evelo CT.

BMC Bioinformatics. 2006 Apr 11;7:200.

4.

Analysis of Affymetrix GeneChip data using amplified RNA.

Cope L, Hartman SM, Göhlmann HW, Tiesman JP, Irizarry RA.

Biotechniques. 2006 Feb;40(2):165-6, 168, 170.

5.

The RIN: an RNA integrity number for assigning integrity values to RNA measurements.

Schroeder A, Mueller O, Stocker S, Salowsky R, Leiber M, Gassmann M, Lightfoot S, Menzel W, Granzow M, Ragg T.

BMC Mol Biol. 2006 Jan 31;7:3.

6.

Use of a mixed tissue RNA design for performance assessments on multiple microarray formats.

Thompson KL, Rosenzweig BA, Pine PS, Retief J, Turpaz Y, Afshari CA, Hamadeh HK, Damore MA, Boedigheimer M, Blomme E, Ciurlionis R, Waring JF, Fuscoe JC, Paules R, Tucker CJ, Fare T, Coffey EM, He Y, Collins PJ, Jarnagin K, Fujimoto S, Ganter B, Kiser G, Kaysser-Kranich T, Sina J, Sistare FD.

Nucleic Acids Res. 2005 Dec 23;33(22):e187.

7.

Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models.

Archer KJ, Dumur CI, Joel SE, Ramakrishnan V.

Biostatistics. 2006 Apr;7(2):198-212. Epub 2005 Aug 31.

8.

Differential modulation of gene expression among rat tissues with warm ischemia.

Miyatake Y, Ikeda H, Michimata R, Koizumi S, Ishizu A, Nishimura N, Yoshiki T.

Exp Mol Pathol. 2004 Dec;77(3):222-30.

PMID:
15507240
9.

Evaluation of quality-control criteria for microarray gene expression analysis.

Dumur CI, Nasim S, Best AM, Archer KJ, Ladd AC, Mas VR, Wilkinson DS, Garrett CT, Ferreira-Gonzalez A.

Clin Chem. 2004 Nov;50(11):1994-2002. Epub 2004 Sep 13.

10.

Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation.

Baechler EC, Batliwalla FM, Karypis G, Gaffney PM, Moser K, Ortmann WA, Espe KJ, Balasubramanian S, Hughes KM, Chan JP, Begovich A, Chang SY, Gregersen PK, Behrens TW.

Genes Immun. 2004 Aug;5(5):347-53.

PMID:
15175644
11.
12.

Moderate degradation does not preclude microarray analysis of small amounts of RNA.

Schoor O, Weinschenk T, Hennenlotter J, Corvin S, Stenzl A, Rammensee HG, Stevanović S.

Biotechniques. 2003 Dec;35(6):1192-6, 1198-201.

PMID:
14682053
13.

DAVID: Database for Annotation, Visualization, and Integrated Discovery.

Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA.

Genome Biol. 2003;4(5):P3. Epub 2003 Apr 3.

15.

Degradation profile of mRNA in a dead rat body: basic semi-quantification study.

Inoue H, Kimura A, Tuji T.

Forensic Sci Int. 2002 Dec 4;130(2-3):127-32.

PMID:
12477633
16.

Changes in differential gene expression because of warm ischemia time of radical prostatectomy specimens.

Dash A, Maine IP, Varambally S, Shen R, Chinnaiyan AM, Rubin MA.

Am J Pathol. 2002 Nov;161(5):1743-8.

17.

The cap-to-tail guide to mRNA turnover.

Wilusz CJ, Wormington M, Peltz SW.

Nat Rev Mol Cell Biol. 2001 Apr;2(4):237-46. Review.

PMID:
11283721
18.

Egr-1, a master switch coordinating upregulation of divergent gene families underlying ischemic stress.

Yan SF, Fujita T, Lu J, Okada K, Shan Zou Y, Mackman N, Pinsky DJ, Stern DM.

Nat Med. 2000 Dec;6(12):1355-61. Erratum in: Nat Med 2001 Apr;7(4):509.

PMID:
11100120
19.

Ribonucleases from rat and bovine liver: purification, specificity and structural characterization.

Zhao W, Kote-Jarai Z, van Santen Y, Hofsteenge J, Beintema JJ.

Biochim Biophys Acta. 1998 Apr 23;1384(1):55-65.

PMID:
9602056
20.

AU-rich elements: characterization and importance in mRNA degradation.

Chen CY, Shyu AB.

Trends Biochem Sci. 1995 Nov;20(11):465-70. Review.

PMID:
8578590
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