Format
Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 39

1.

Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers.

Goren A, Ram O, Amit M, Keren H, Lev-Maor G, Vig I, Pupko T, Ast G.

Mol Cell. 2006 Jun 23;22(6):769-81.

2.

Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes.

Wang J, Smith PJ, Krainer AR, Zhang MQ.

Nucleic Acids Res. 2005 Sep 7;33(16):5053-62. Print 2005.

3.

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.

Favorov AV, Gelfand MS, Gerasimova AV, Ravcheev DA, Mironov AA, Makeev VJ.

Bioinformatics. 2005 May 15;21(10):2240-5. Epub 2005 Feb 22.

4.

Systematic identification and analysis of exonic splicing silencers.

Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, Burge CB.

Cell. 2004 Dec 17;119(6):831-45.

5.

SpliceMachine: predicting splice sites from high-dimensional local context representations.

Degroeve S, Saeys Y, De Baets B, Rouzé P, Van de Peer Y.

Bioinformatics. 2005 Apr 15;21(8):1332-8. Epub 2004 Nov 25.

6.

Accurate identification of alternatively spliced exons using support vector machine.

Dror G, Sorek R, Shamir R.

Bioinformatics. 2005 Apr 1;21(7):897-901. Epub 2004 Nov 5.

7.

Plant serine/arginine-rich proteins and their role in pre-mRNA splicing.

Reddy AS.

Trends Plant Sci. 2004 Nov;9(11):541-7. Review.

PMID:
15501179
8.

A plethora of plant serine/arginine-rich proteins: redundancy or evolution of novel gene functions?

Kalyna M, Barta A.

Biochem Soc Trans. 2004 Aug;32(Pt 4):561-4.

PMID:
15270675
9.

A suite of web-based programs to search for transcriptional regulatory motifs.

Liu Y, Wei L, Batzoglou S, Brutlag DL, Liu JS, Liu XS.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W204-7.

10.

Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA.

Bourgeois CF, Lejeune F, Stévenin J.

Prog Nucleic Acid Res Mol Biol. 2004;78:37-88. Review.

PMID:
15210328
11.

WebLogo: a sequence logo generator.

Crooks GE, Hon G, Chandonia JM, Brenner SE.

Genome Res. 2004 Jun;14(6):1188-90.

12.

Computational definition of sequence motifs governing constitutive exon splicing.

Zhang XH, Chasin LA.

Genes Dev. 2004 Jun 1;18(11):1241-50. Epub 2004 May 14.

13.

Determinants of plant U12-dependent intron splicing efficiency.

Lewandowska D, Simpson CG, Clark GP, Jennings NS, Barciszewska-Pacak M, Lin CF, Makalowski W, Brown JW, Jarmolowski A.

Plant Cell. 2004 May;16(5):1340-52. Epub 2004 Apr 20.

14.

Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression.

Zheng ZM.

J Biomed Sci. 2004 May-Jun;11(3):278-94. Review. Erratum in: J Biomed Sci. 2004 Jul-Aug;11(4):538.

15.

SPLICE SITE SELECTION IN PLANT PRE-mRNA SPLICING.

Brown JW, Simpson CG.

Annu Rev Plant Physiol Plant Mol Biol. 1998 Jun;49:77-95.

PMID:
15012228
16.

Gibbs Recursive Sampler: finding transcription factor binding sites.

Thompson W, Rouchka EC, Lawrence CE.

Nucleic Acids Res. 2003 Jul 1;31(13):3580-5.

17.

Predictive identification of exonic splicing enhancers in human genes.

Fairbrother WG, Yeh RF, Sharp PA, Burge CB.

Science. 2002 Aug 9;297(5583):1007-13. Epub 2002 Jul 11.

18.

Full-length messenger RNA sequences greatly improve genome annotation.

Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL.

Genome Biol. 2002;3(6):RESEARCH0029. Epub 2002 May 30.

19.

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

Thijs G, Marchal K, Lescot M, Rombauts S, De Moor B, Rouzé P, Moreau Y.

J Comput Biol. 2002;9(2):447-64.

PMID:
12015892
20.

Listening to silence and understanding nonsense: exonic mutations that affect splicing.

Cartegni L, Chew SL, Krainer AR.

Nat Rev Genet. 2002 Apr;3(4):285-98. Review.

PMID:
11967553
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk