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Results: 1 to 20 of 46

1.

Systems approach to refining genome annotation.

Reed JL, Patel TR, Chen KH, Joyce AR, Applebee MK, Herring CD, Bui OT, Knight EM, Fong SS, Palsson BO.

Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17480-4. Epub 2006 Nov 6.

PMID:
17088549
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Sphingolipid metabolism diseases.

Kolter T, Sandhoff K.

Biochim Biophys Acta. 2006 Dec;1758(12):2057-79. Epub 2006 Jun 14. Review.

PMID:
16854371
[PubMed - indexed for MEDLINE]
Free Article
3.

GRB14, GPD1, and GDF8 as potential network collaborators in weight loss-induced improvements in insulin action in human skeletal muscle.

Park JJ, Berggren JR, Hulver MW, Houmard JA, Hoffman EP.

Physiol Genomics. 2006 Oct 11;27(2):114-21. Epub 2006 Jul 18.

PMID:
16849634
[PubMed - indexed for MEDLINE]
Free Article
4.

Systems biology of SNPs.

Jamshidi N, Palsson BØ.

Mol Syst Biol. 2006;2:38. Epub 2006 Jul 4. Review.

PMID:
16820779
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Metabolic analysis of adaptive evolution for in silico-designed lactate-producing strains.

Hua Q, Joyce AR, Fong SS, Palsson BØ.

Biotechnol Bioeng. 2006 Dec 5;95(5):992-1002.

PMID:
16807925
[PubMed - indexed for MEDLINE]
6.

Metabolite coupling in genome-scale metabolic networks.

Becker SA, Price ND, Palsson BØ.

BMC Bioinformatics. 2006 Mar 6;7:111.

PMID:
16519800
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Towards multidimensional genome annotation.

Reed JL, Famili I, Thiele I, Palsson BO.

Nat Rev Genet. 2006 Feb;7(2):130-41. Review.

PMID:
16418748
[PubMed - indexed for MEDLINE]
8.

From genomics to chemical genomics: new developments in KEGG.

Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D354-7.

PMID:
16381885
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Use of constraint-based modeling for the prediction and validation of antimicrobial targets.

Trawick JD, Schilling CH.

Biochem Pharmacol. 2006 Mar 30;71(7):1026-35. Epub 2005 Dec 2. Review.

PMID:
16329998
[PubMed - indexed for MEDLINE]
10.

Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states.

Fong SS, Joyce AR, Palsson BØ.

Genome Res. 2005 Oct;15(10):1365-72.

PMID:
16204189
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

In silico design and adaptive evolution of Escherichia coli for production of lactic acid.

Fong SS, Burgard AP, Herring CD, Knight EM, Blattner FR, Maranas CD, Palsson BO.

Biotechnol Bioeng. 2005 Sep 5;91(5):643-8.

PMID:
15962337
[PubMed - indexed for MEDLINE]
12.

Modeling hybridoma cell metabolism using a generic genome-scale metabolic model of Mus musculus.

Sheikh K, Förster J, Nielsen LK.

Biotechnol Prog. 2005 Jan-Feb;21(1):112-21.

PMID:
15903248
[PubMed - indexed for MEDLINE]
13.

Computational prediction of human metabolic pathways from the complete human genome.

Romero P, Wagg J, Green ML, Kaiser D, Krummenacker M, Karp PD.

Genome Biol. 2005;6(1):R2. Epub 2004 Dec 22.

PMID:
15642094
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Entrez Gene: gene-centered information at NCBI.

Maglott D, Ostell J, Pruitt KD, Tatusova T.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D54-8.

PMID:
15608257
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.

Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.

PMID:
15608251
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet.

Thiele I, Price ND, Vo TD, Palsson BØ.

J Biol Chem. 2005 Mar 25;280(12):11683-95. Epub 2004 Nov 30.

PMID:
15572364
[PubMed - indexed for MEDLINE]
Free Article
17.

Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.

Papin JA, Reed JL, Palsson BO.

Trends Biochem Sci. 2004 Dec;29(12):641-7. Review.

PMID:
15544950
[PubMed - indexed for MEDLINE]
18.

Finishing the euchromatic sequence of the human genome.

International Human Genome Sequencing Consortium.

Nature. 2004 Oct 21;431(7011):931-45.

PMID:
15496913
[PubMed - indexed for MEDLINE]
19.

Genome-scale models of microbial cells: evaluating the consequences of constraints.

Price ND, Reed JL, Palsson BØ.

Nat Rev Microbiol. 2004 Nov;2(11):886-97. Review.

PMID:
15494745
[PubMed - indexed for MEDLINE]
20.

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model.

Duarte NC, Herrgård MJ, Palsson BØ.

Genome Res. 2004 Jul;14(7):1298-309. Epub 2004 Jun 14.

PMID:
15197165
[PubMed - indexed for MEDLINE]
Free PMC Article

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