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Items: 1 to 20 of 29

1.

Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis.

Sotiriou C, Wirapati P, Loi S, Harris A, Fox S, Smeds J, Nordgren H, Farmer P, Praz V, Haibe-Kains B, Desmedt C, Larsimont D, Cardoso F, Peterse H, Nuyten D, Buyse M, Van de Vijver MJ, Bergh J, Piccart M, Delorenzi M.

J Natl Cancer Inst. 2006 Feb 15;98(4):262-72.

2.

A cell proliferation signature is a marker of extremely poor outcome in a subpopulation of breast cancer patients.

Dai H, van't Veer L, Lamb J, He YD, Mao M, Fine BM, Bernards R, van de Vijver M, Deutsch P, Sachs A, Stoughton R, Friend S.

Cancer Res. 2005 May 15;65(10):4059-66.

3.

An expression-based site of origin diagnostic method designed for clinical application to cancer of unknown origin.

Tothill RW, Kowalczyk A, Rischin D, Bousioutas A, Haviv I, van Laar RK, Waring PM, Zalcberg J, Ward R, Biankin AV, Sutherland RL, Henshall SM, Fong K, Pollack JR, Bowtell DD, Holloway AJ.

Cancer Res. 2005 May 15;65(10):4031-40. Erratum in: Cancer Res. 2005 Sep 1;65(17):8057.

4.

Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival.

Chang HY, Nuyten DS, Sneddon JB, Hastie T, Tibshirani R, Sørlie T, Dai H, He YD, van't Veer LJ, Bartelink H, van de Rijn M, Brown PO, van de Vijver MJ.

Proc Natl Acad Sci U S A. 2005 Mar 8;102(10):3738-43. Epub 2005 Feb 8.

5.

A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer.

Paik S, Shak S, Tang G, Kim C, Baker J, Cronin M, Baehner FL, Walker MG, Watson D, Park T, Hiller W, Fisher ER, Wickerham DL, Bryant J, Wolmark N.

N Engl J Med. 2004 Dec 30;351(27):2817-26. Epub 2004 Dec 10.

6.
7.

Statistical modeling for selecting housekeeper genes.

Szabo A, Perou CM, Karaca M, Perreard L, Palais R, Quackenbush JF, Bernard PS.

Genome Biol. 2004;5(8):R59. Epub 2004 Jul 29. Erratum in: Genome Biol. 2008;9(8):405. Palais, Robert [added].

8.

Semi-supervised methods to predict patient survival from gene expression data.

Bair E, Tibshirani R.

PLoS Biol. 2004 Apr;2(4):E108. Epub 2004 Apr 13.

9.

Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia.

Bullinger L, Döhner K, Bair E, Fröhling S, Schlenk RF, Tibshirani R, Döhner H, Pollack JR.

N Engl J Med. 2004 Apr 15;350(16):1605-16.

10.
11.

Adjustment of systematic microarray data biases.

Benito M, Parker J, Du Q, Wu J, Xiang D, Perou CM, Marron JS.

Bioinformatics. 2004 Jan 1;20(1):105-14.

12.

Breast cancer classification and prognosis based on gene expression profiles from a population-based study.

Sotiriou C, Neo SY, McShane LM, Korn EL, Long PM, Jazaeri A, Martiat P, Fox SB, Harris AL, Liu ET.

Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10393-8. Epub 2003 Aug 13.

13.

Repeated observation of breast tumor subtypes in independent gene expression data sets.

Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Demeter J, Perou CM, Lønning PE, Brown PO, Børresen-Dale AL, Botstein D.

Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8418-23. Epub 2003 Jun 26.

14.

Current perspectives on HER2 testing: a review of national testing guidelines.

Bilous M, Dowsett M, Hanna W, Isola J, Lebeau A, Moreno A, Penault-Llorca F, Rüschoff J, Tomasic G, van de Vijver M.

Mod Pathol. 2003 Feb;16(2):173-82. Review.

15.

SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data.

Diehn M, Sherlock G, Binkley G, Jin H, Matese JC, Hernandez-Boussard T, Rees CA, Cherry JM, Botstein D, Brown PO, Alizadeh AA.

Nucleic Acids Res. 2003 Jan 1;31(1):219-23.

16.

A gene-expression signature as a predictor of survival in breast cancer.

van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C, Marton MJ, Parrish M, Atsma D, Witteveen A, Glas A, Delahaye L, van der Velde T, Bartelink H, Rodenhuis S, Rutgers ET, Friend SH, Bernards R.

N Engl J Med. 2002 Dec 19;347(25):1999-2009.

17.

A prediction-based resampling method for estimating the number of clusters in a dataset.

Dudoit S, Fridlyand J.

Genome Biol. 2002 Jun 25;3(7):RESEARCH0036. Epub 2002 Jun 25.

18.

Identification of genes periodically expressed in the human cell cycle and their expression in tumors.

Whitfield ML, Sherlock G, Saldanha AJ, Murray JI, Ball CA, Alexander KE, Matese JC, Perou CM, Hurt MM, Brown PO, Botstein D.

Mol Biol Cell. 2002 Jun;13(6):1977-2000.

19.

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.

Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP.

Nucleic Acids Res. 2002 Feb 15;30(4):e15.

20.

Gene expression profiling predicts clinical outcome of breast cancer.

van 't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M, Peterse HL, van der Kooy K, Marton MJ, Witteveen AT, Schreiber GJ, Kerkhoven RM, Roberts C, Linsley PS, Bernards R, Friend SH.

Nature. 2002 Jan 31;415(6871):530-6.

PMID:
11823860
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