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Results: 1 to 20 of 40

1.

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database.

Eng JK, McCormack AL, Yates JR.

J Am Soc Mass Spectrom. 1994 Nov;5(11):976-89. doi: 10.1016/1044-0305(94)80016-2.

PMID:
24226387
[PubMed]
2.

Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor.

Myers CR, Nealson KH.

Science. 1988 Jun 3;240(4857):1319-21.

PMID:
17815852
[PubMed]
3.

Transcriptome analysis of Shewanella oneidensis MR-1 in response to elevated salt conditions.

Liu Y, Gao W, Wang Y, Wu L, Liu X, Yan T, Alm E, Arkin A, Thompson DK, Fields MW, Zhou J.

J Bacteriol. 2005 Apr;187(7):2501-7.

PMID:
15774893
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, Holzman T, Klappenbach JA, Konstantinidis KT, Land ML, Lipton MS, McCue LA, Monroe M, Pasa-Tolic L, Pinchuk G, Purvine S, Serres MH, Tsapin S, Zakrajsek BA, Zhu W, Zhou J, Larimer FW, Lawrence CE, Riley M, Collart FR, Yates JR 3rd, Smith RD, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM.

Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):2099-104. Epub 2005 Jan 31.

PMID:
15684069
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Proteogenomic mapping as a complementary method to perform genome annotation.

Jaffe JD, Berg HC, Church GM.

Proteomics. 2004 Jan;4(1):59-77.

PMID:
14730672
[PubMed - indexed for MEDLINE]
6.

A computational study of Shewanella oneidensis MR-1: structural prediction and functional inference of hypothetical proteins.

Yost C, Hauser L, Larimer F, Thompson D, Beliaev A, Zhou J, Xu Y, Xu D.

OMICS. 2003 Summer;7(2):177-91.

PMID:
14506847
[PubMed - indexed for MEDLINE]
7.

Nickel uptake and utilization by microorganisms.

Mulrooney SB, Hausinger RP.

FEMS Microbiol Rev. 2003 Jun;27(2-3):239-61. Review.

PMID:
12829270
[PubMed - indexed for MEDLINE]
8.

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation.

Liu Y, Zhou J, Omelchenko MV, Beliaev AS, Venkateswaran A, Stair J, Wu L, Thompson DK, Xu D, Rogozin IB, Gaidamakova EK, Zhai M, Makarova KS, Koonin EV, Daly MJ.

Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4191-6. Epub 2003 Mar 21.

PMID:
12651953
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Code developments to improve the efficiency of automated MS/MS spectra interpretation.

Sadygov RG, Eng J, Durr E, Saraf A, McDonald H, MacCoss MJ, Yates JR 3rd.

J Proteome Res. 2002 May-Jun;1(3):211-5.

PMID:
12645897
[PubMed - indexed for MEDLINE]
10.

Shewanella--the environmentally versatile genome.

Tiedje JM.

Nat Biotechnol. 2002 Nov;20(11):1093-4. No abstract available.

PMID:
12410251
[PubMed - indexed for MEDLINE]
11.

Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria.

Liu C, Gorby YA, Zachara JM, Fredrickson JK, Brown CF.

Biotechnol Bioeng. 2002 Dec 20;80(6):637-49.

PMID:
12378605
[PubMed - indexed for MEDLINE]
12.

Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.

Heidelberg JF, Paulsen IT, Nelson KE, Gaidos EJ, Nelson WC, Read TD, Eisen JA, Seshadri R, Ward N, Methe B, Clayton RA, Meyer T, Tsapin A, Scott J, Beanan M, Brinkac L, Daugherty S, DeBoy RT, Dodson RJ, Durkin AS, Haft DH, Kolonay JF, Madupu R, Peterson JD, Umayam LA, White O, Wolf AM, Vamathevan J, Weidman J, Impraim M, Lee K, Berry K, Lee C, Mueller J, Khouri H, Gill J, Utterback TR, McDonald LA, Feldblyum TV, Smith HO, Venter JC, Nealson KH, Fraser CM.

Nat Biotechnol. 2002 Nov;20(11):1118-23. Epub 2002 Oct 7.

PMID:
12368813
[PubMed - indexed for MEDLINE]
13.

Microarray transcription profiling of a Shewanella oneidensis etrA mutant.

Beliaev AS, Thompson DK, Fields MW, Wu L, Lies DP, Nealson KH, Zhou J.

J Bacteriol. 2002 Aug;184(16):4612-6.

PMID:
12142431
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress.

Thompson DK, Beliaev AS, Giometti CS, Tollaksen SL, Khare T, Lies DP, Nealson KH, Lim H, Yates J 3rd, Brandt CC, Tiedje JM, Zhou J.

Appl Environ Microbiol. 2002 Feb;68(2):881-92.

PMID:
11823232
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Aging and oxidative stress: studies of some genes involved both in aging and in response to oxidative stress.

Camougrand N, Rigoulet M.

Respir Physiol. 2001 Nov 15;128(3):393-401. Review.

PMID:
11718766
[PubMed - indexed for MEDLINE]
16.

The tripartite ATP-independent periplasmic (TRAP) transporters of bacteria and archaea.

Kelly DJ, Thomas GH.

FEMS Microbiol Rev. 2001 Aug;25(4):405-24. Review.

PMID:
11524131
[PubMed - indexed for MEDLINE]
17.

Prohibitins act as a membrane-bound chaperone for the stabilization of mitochondrial proteins.

Nijtmans LG, de Jong L, Artal Sanz M, Coates PJ, Berden JA, Back JW, Muijsers AO, van der Spek H, Grivell LA.

EMBO J. 2000 Jun 1;19(11):2444-51.

PMID:
10835343
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Fundamental aspects of reactive oxygen species, or what's the matter with oxygen?

Fridovich I.

Ann N Y Acad Sci. 1999;893:13-8. Review.

PMID:
10672226
[PubMed - indexed for MEDLINE]
19.

Knock-out of the cyaY gene in Escherichia coli does not affect cellular iron content and sensitivity to oxidants.

Li DS, Ohshima K, Jiralerspong S, Bojanowski MW, Pandolfo M.

FEBS Lett. 1999 Jul 30;456(1):13-6.

PMID:
10452520
[PubMed - indexed for MEDLINE]
Free Article
20.

Oxidative stress.

Storz G, Imlay JA.

Curr Opin Microbiol. 1999 Apr;2(2):188-94. Review.

PMID:
10322176
[PubMed - indexed for MEDLINE]

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