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Results: 1 to 20 of 33

1.

An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis.

Sweet-Cordero A, Mukherjee S, Subramanian A, You H, Roix JJ, Ladd-Acosta C, Mesirov J, Golub TR, Jacks T.

Nat Genet. 2005 Jan;37(1):48-55. Epub 2004 Dec 19.

PMID:
15608639
[PubMed - indexed for MEDLINE]
Free Article
2.

Microarray analysis of changes in cellular gene expression induced by productive infection of primary human astrocytes: implications for HAD.

Kim SY, Li J, Bentsman G, Brooks AI, Volsky DJ.

J Neuroimmunol. 2004 Dec;157(1-2):17-26.

PMID:
15579276
[PubMed - indexed for MEDLINE]
3.

Statistical concerns about the GSEA procedure.

Damian D, Gorfine M.

Nat Genet. 2004 Jul;36(7):663; author reply 663. No abstract available.

PMID:
15226741
[PubMed - indexed for MEDLINE]
4.

Bioinformatics strategies for translating genome-wide expression analyses into clinically useful cancer markers.

Rhodes DR, Chinnaiyan AM.

Ann N Y Acad Sci. 2004 May;1020:32-40. Review.

PMID:
15208181
[PubMed - indexed for MEDLINE]
5.

Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression.

Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM.

Proc Natl Acad Sci U S A. 2004 Jun 22;101(25):9309-14. Epub 2004 Jun 7.

PMID:
15184677
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Are data from different gene expression microarray platforms comparable?

Järvinen AK, Hautaniemi S, Edgren H, Auvinen P, Saarela J, Kallioniemi OP, Monni O.

Genomics. 2004 Jun;83(6):1164-8.

PMID:
15177569
[PubMed - indexed for MEDLINE]
7.

Increased measurement accuracy for sequence-verified microarray probes.

Mecham BH, Wetmore DZ, Szallasi Z, Sadovsky Y, Kohane I, Mariani TJ.

Physiol Genomics. 2004 Aug 11;18(3):308-15.

PMID:
15161964
[PubMed - indexed for MEDLINE]
8.

Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

Mecham BH, Klus GT, Strovel J, Augustus M, Byrne D, Bozso P, Wetmore DZ, Mariani TJ, Kohane IS, Szallasi Z.

Nucleic Acids Res. 2004 May 25;32(9):e74.

PMID:
15161944
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genomic approaches to hematologic malignancies.

Ebert BL, Golub TR.

Blood. 2004 Aug 15;104(4):923-32. Epub 2004 May 20. Review.

PMID:
15155462
[PubMed - indexed for MEDLINE]
Free Article
10.

A cross-study comparison of gene expression studies for the molecular classification of lung cancer.

Parmigiani G, Garrett-Mayer ES, Anbazhagan R, Gabrielson E.

Clin Cancer Res. 2004 May 1;10(9):2922-7.

PMID:
15131026
[PubMed - indexed for MEDLINE]
Free Article
11.

Skeletal muscle gene expression profiles in 20-29 year old and 65-71 year old women.

Welle S, Brooks AI, Delehanty JM, Needler N, Bhatt K, Shah B, Thornton CA.

Exp Gerontol. 2004 Mar;39(3):369-77.

PMID:
15036396
[PubMed - indexed for MEDLINE]
12.

Identifying biological themes within lists of genes with EASE.

Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA.

Genome Biol. 2003;4(10):R70. Epub 2003 Sep 11.

PMID:
14519205
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Evaluation of gene expression measurements from commercial microarray platforms.

Tan PK, Downey TJ, Spitznagel EL Jr, Xu P, Fu D, Dimitrov DS, Lempicki RA, Raaka BM, Cam MC.

Nucleic Acids Res. 2003 Oct 1;31(19):5676-84.

PMID:
14500831
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Repeated observation of breast tumor subtypes in independent gene expression data sets.

Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, Nobel A, Deng S, Johnsen H, Pesich R, Geisler S, Demeter J, Perou CM, Lønning PE, Brown PO, Børresen-Dale AL, Botstein D.

Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8418-23. Epub 2003 Jun 26.

PMID:
12829800
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.

Mootha VK, Lindgren CM, Eriksson KF, Subramanian A, Sihag S, Lehar J, Puigserver P, Carlsson E, Ridderstråle M, Laurila E, Houstis N, Daly MJ, Patterson N, Mesirov JP, Golub TR, Tamayo P, Spiegelman B, Lander ES, Hirschhorn JN, Altshuler D, Groop LC.

Nat Genet. 2003 Jul;34(3):267-73.

PMID:
12808457
[PubMed - indexed for MEDLINE]
16.

DAVID: Database for Annotation, Visualization, and Integrated Discovery.

Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA.

Genome Biol. 2003;4(5):P3. Epub 2003 Apr 3.

PMID:
12734009
[PubMed - indexed for MEDLINE]
17.

GoMiner: a resource for biological interpretation of genomic and proteomic data.

Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, Sunshine M, Narasimhan S, Kane DW, Reinhold WC, Lababidi S, Bussey KJ, Riss J, Barrett JC, Weinstein JN.

Genome Biol. 2003;4(4):R28. Epub 2003 Mar 25.

PMID:
12702209
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Summaries of Affymetrix GeneChip probe level data.

Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP.

Nucleic Acids Res. 2003 Feb 15;31(4):e15.

PMID:
12582260
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.

Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, Conklin BR.

Genome Biol. 2003;4(1):R7. Epub 2003 Jan 6.

PMID:
12540299
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

HIV-1 Tat reprograms immature dendritic cells to express chemoattractants for activated T cells and macrophages.

Izmailova E, Bertley FM, Huang Q, Makori N, Miller CJ, Young RA, Aldovini A.

Nat Med. 2003 Feb;9(2):191-7. Epub 2003 Jan 21.

PMID:
12539042
[PubMed - indexed for MEDLINE]

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