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Items: 1 to 20 of 33


Global analysis of bacterial transcription factors to predict cellular target processes.

Doerks T, Andrade MA, Lathe W 3rd, von Mering C, Bork P.

Trends Genet. 2004 Mar;20(3):126-31. Review.


Identifying protein function--a call for community action.

Roberts RJ.

PLoS Biol. 2004 Mar;2(3):E42. Epub 2004 Mar 16. No abstract available.


Whole-genome annotation by using evidence integration in functional-linkage networks.

Karaoz U, Murali TM, Letovsky S, Zheng Y, Ding C, Cantor CR, Kasif S.

Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2888-93. Epub 2004 Feb 23.


Genome evolution reveals biochemical networks and functional modules.

von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15428-33. Epub 2003 Dec 12.


Comparative genomics of Archaea: how much have we learned in six years, and what's next?

Makarova KS, Koonin EV.

Genome Biol. 2003;4(8):115. Epub 2003 Jul 16. Review.


The Methanocaldococcus jannaschii protein Mj0968 is not a P-type ATPase.

Bramkamp M, Gassel M, Herkenhoff-Hesselmann B, Bertrand J, Altendorf K.

FEBS Lett. 2003 May 22;543(1-3):31-6.


Potential genomic determinants of hyperthermophily.

Makarova KS, Wolf YI, Koonin EV.

Trends Genet. 2003 Apr;19(4):172-6.


Transposon mutagenesis of Mycobacterium marinum identifies a locus linking pigmentation and intracellular survival.

Gao LY, Groger R, Cox JS, Beverley SM, Lawson EH, Brown EJ.

Infect Immun. 2003 Feb;71(2):922-9.


The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O'Donovan C, Phan I, Pilbout S, Schneider M.

Nucleic Acids Res. 2003 Jan 1;31(1):365-70.


STRING: a database of predicted functional associations between proteins.

von Mering C, Huynen M, Jaeggi D, Schmidt S, Bork P, Snel B.

Nucleic Acids Res. 2003 Jan 1;31(1):258-61.


Involvement of in vivo induced icmF gene of Vibrio cholerae in motility, adherence to epithelial cells, and conjugation frequency.

Das S, Chakrabortty A, Banerjee R, Chaudhuri K.

Biochem Biophys Res Commun. 2002 Jul 26;295(4):922-8.


Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus.

Shin DH, Yokota H, Kim R, Kim SH.

Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):7980-5.


Holliday junction binding and processing by the RuvA protein of Mycoplasma pneumoniae.

Ingleston SM, Dickman MJ, Grasby JA, Hornby DP, Sharples GJ, Lloyd RG.

Eur J Biochem. 2002 Mar;269(5):1525-33.


Predictome: a database of putative functional links between proteins.

Mellor JC, Yanai I, Clodfelter KH, Mintseris J, DeLisi C.

Nucleic Acids Res. 2002 Jan 1;30(1):306-9.


The Pfam protein families database.

Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL.

Nucleic Acids Res. 2002 Jan 1;30(1):276-80.


The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV.

Nucleic Acids Res. 2001 Jan 1;29(1):22-8.


Predicting protein function by genomic context: quantitative evaluation and qualitative inferences.

Huynen M, Snel B, Lathe W 3rd, Bork P.

Genome Res. 2000 Aug;10(8):1204-10.


Soluble P-type ATPase from an archaeon, Methanococcus jannaschii.

Ogawa H, Haga T, Toyoshima C.

FEBS Lett. 2000 Apr 7;471(1):99-102.

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