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Items: 1 to 20 of 31

1.

MrBayes 3: Bayesian phylogenetic inference under mixed models.

Ronquist F, Huelsenbeck JP.

Bioinformatics. 2003 Aug 12;19(12):1572-4.

2.

The evolution, distribution and diversity of endogenous retroviruses.

Gifford R, Tristem M.

Virus Genes. 2003 May;26(3):291-315. Review.

PMID:
12876457
3.

Human-specific subfamilies of HERV-K (HML-2) long terminal repeats: three master genes were active simultaneously during branching of hominoid lineages.

Buzdin A, Ustyugova S, Khodosevich K, Mamedov I, Lebedev Y, Hunsmann G, Sverdlov E.

Genomics. 2003 Feb;81(2):149-56.

PMID:
12620392
4.

HERVd: database of human endogenous retroviruses.

Paces J, Pavlícek A, Paces V.

Nucleic Acids Res. 2002 Jan 1;30(1):205-6.

5.
6.

Endogenous retroviruses: still active after all these years?

Stoye JP.

Curr Biol. 2001 Nov 13;11(22):R914-6. Review.

7.
8.
9.

Insertional polymorphisms of full-length endogenous retroviruses in humans.

Turner G, Barbulescu M, Su M, Jensen-Seaman MI, Kidd KK, Lenz J.

Curr Biol. 2001 Oct 2;11(19):1531-5.

12.

Initial sequencing and analysis of the human genome.

Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann Y, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Raymond C, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blöcker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowki J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ, Szustakowki J; International Human Genome Sequencing Consortium.

Nature. 2001 Feb 15;409(6822):860-921. Erratum in: Nature 2001 Jun 7;411(6838):720. Szustakowki, J [corrected to Szustakowski, J]. Nature 2001 Aug 2;412(6846):565.

PMID:
11237011
13.

Human L1 retrotransposition: cis preference versus trans complementation.

Wei W, Gilbert N, Ooi SL, Lawler JF, Ostertag EM, Kazazian HH, Boeke JD, Moran JV.

Mol Cell Biol. 2001 Feb;21(4):1429-39.

14.

EMBOSS: the European Molecular Biology Open Software Suite.

Rice P, Longden I, Bleasby A.

Trends Genet. 2000 Jun;16(6):276-7. No abstract available.

PMID:
10827456
16.

Inferring the historical patterns of biological evolution.

Pagel M.

Nature. 1999 Oct 28;401(6756):877-84.

PMID:
10553904
17.

Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans.

Barbulescu M, Turner G, Seaman MI, Deinard AS, Kidd KK, Lenz J.

Curr Biol. 1999 Aug 26;9(16):861-8.

18.

Constructing primate phylogenies from ancient retrovirus sequences.

Johnson WE, Coffin JM.

Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10254-60.

19.

Phylogenetic evidence for recombination in dengue virus.

Holmes EC, Worobey M, Rambaut A.

Mol Biol Evol. 1999 Mar;16(3):405-9.

20.

Diversity of human endogenous retrovirus class II-like sequences.

Andersson ML, Lindeskog M, Medstrand P, Westley B, May F, Blomberg J.

J Gen Virol. 1999 Jan;80 ( Pt 1):255-60.

PMID:
9934709
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