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Results: 1 to 20 of 991

1.

Homology modeling using simulated annealing of restrained molecular dynamics and conformational search calculations with CONGEN: application in predicting the three-dimensional structure of murine homeodomain Msx-1.

Li H, Tejero R, Monleon D, Bassolino-Klimas D, Abate-Shen C, Bruccoleri RE, Montelione GT.

Protein Sci. 1997 May;6(5):956-70.

PMID:
9144767
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Homology modeling of an RNP domain from a human RNA-binding protein: Homology-constrained energy optimization provides a criterion for distinguishing potential sequence alignments.

Sahasrabudhe PV, Tejero R, Kitao S, Furuichi Y, Montelione GT.

Proteins. 1998 Dec 1;33(4):558-66.

PMID:
9849939
[PubMed - indexed for MEDLINE]
3.

Simulated annealing with restrained molecular dynamics using CONGEN: energy refinement of the NMR solution structures of epidermal and type-alpha transforming growth factors.

Tejero R, Bassolino-Klimas D, Bruccoleri RE, Montelione GT.

Protein Sci. 1996 Apr;5(4):578-92.

PMID:
8845748
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Simulated annealing with restrained molecular dynamics using a flexible restraint potential: theory and evaluation with simulated NMR constraints.

Bassolino-Klimas D, Tejero R, Krystek SR, Metzler WJ, Montelione GT, Bruccoleri RE.

Protein Sci. 1996 Apr;5(4):593-603.

PMID:
8845749
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex.

Billeter M, Qian YQ, Otting G, Müller M, Gehring W, Wüthrich K.

J Mol Biol. 1993 Dec 20;234(4):1084-93.

PMID:
7903398
[PubMed - indexed for MEDLINE]
6.

An automated method for modeling proteins on known templates using distance geometry.

Srinivasan S, March CJ, Sudarsanam S.

Protein Sci. 1993 Feb;2(2):277-89.

PMID:
8443604
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Nuclear magnetic resonance spectroscopy of a DNA complex with the uniformly 13C-labeled Antennapedia homeodomain and structure determination of the DNA-bound homeodomain.

Qian YQ, Otting G, Billeter M, Müller M, Gehring W, Wüthrich K.

J Mol Biol. 1993 Dec 20;234(4):1070-83.

PMID:
7903397
[PubMed - indexed for MEDLINE]
8.

Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA.

Li T, Stark MR, Johnson AD, Wolberger C.

Science. 1995 Oct 13;270(5234):262-9. Erratum in: Science 1995 Nov 17;270(5239):1105.

PMID:
7569974
[PubMed - indexed for MEDLINE]
9.

The NMR solution structure of the non-classical homeodomain from the rat liver LFB1/HNF1 transcription factor.

Schott O, Billeter M, Leiting B, Wider G, Wüthrich K.

J Mol Biol. 1997 Apr 4;267(3):673-83.

PMID:
9126845
[PubMed - indexed for MEDLINE]
10.

Crystal structure of the Msx-1 homeodomain/DNA complex.

Hovde S, Abate-Shen C, Geiger JH.

Biochemistry. 2001 Oct 9;40(40):12013-21.

PMID:
11580277
[PubMed - indexed for MEDLINE]
11.

Threading analysis of prospero-type homeodomains.

Banerjee-Basu S, Landsman D, Baxevanis AD.

In Silico Biol. 1999;1(3):163-73.

PMID:
11471237
[PubMed - indexed for MEDLINE]
12.

Nuclear magnetic resonance solution structure of the fushi tarazu homeodomain from Drosophila and comparison with the Antennapedia homeodomain.

Qian YQ, Furukubo-Tokunaga K, Resendez-Perez D, Müller M, Gehring WJ, Wüthrich K.

J Mol Biol. 1994 May 6;238(3):333-45.

PMID:
7909851
[PubMed - indexed for MEDLINE]
13.

Assessing model accuracy using the homology modeling automatically software.

Bhattacharya A, Wunderlich Z, Monleon D, Tejero R, Montelione GT.

Proteins. 2008 Jan 1;70(1):105-18.

PMID:
17640066
[PubMed - indexed for MEDLINE]
14.

Solution structure of the Oct-1 POU homeodomain determined by NMR and restrained molecular dynamics.

Cox M, van Tilborg PJ, de Laat W, Boelens R, van Leeuwen HC, van der Vliet PC, Kaptein R.

J Biomol NMR. 1995 Jul;6(1):23-32.

PMID:
7663141
[PubMed - indexed for MEDLINE]
15.

Comparison of multiple crystal structures with NMR data for engrailed homeodomain.

Religa TL.

J Biomol NMR. 2008 Mar;40(3):189-202. doi: 10.1007/s10858-008-9223-9. Epub 2008 Feb 15.

PMID:
18274703
[PubMed - indexed for MEDLINE]
16.
17.

Comparative stability analysis of the thyroid transcription factor 1 and Antennapedia homeodomains: evidence for residue 54 in controlling the structural stability of the recognition helix.

Tell G, Acquaviva R, Formisano S, Fogolari F, Pucillo C, Damante G.

Int J Biochem Cell Biol. 1999 Nov;31(11):1339-53.

PMID:
10605826
[PubMed - indexed for MEDLINE]
18.

Secondary structure of the homeo domain of yeast alpha 2 repressor determined by NMR spectroscopy.

Phillips CL, Vershon AK, Johnson AD, Dahlquist FW.

Genes Dev. 1991 May;5(5):764-72.

PMID:
1673952
[PubMed - indexed for MEDLINE]
Free Article
19.

Nuclear magnetic resonance solution structure of the Arc repressor using relaxation matrix calculations.

Bonvin AM, Vis H, Breg JN, Burgering MJ, Boelens R, Kaptein R.

J Mol Biol. 1994 Feb 11;236(1):328-41.

PMID:
8107113
[PubMed - indexed for MEDLINE]

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