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Items: 1 to 20 of 88

1.

The application of numerical estimates of base calling accuracy to DNA sequencing projects.

Bonfield JK, Staden R.

Nucleic Acids Res. 1995 Apr 25;23(8):1406-10.

2.

Improving the quality of automatic DNA sequence assembly using fluorescent trace-data classifications.

Allex CF, Baldwin SF, Shavlik JW, Blattner FR.

Proc Int Conf Intell Syst Mol Biol. 1996;4:3-14. Review.

PMID:
8877499
3.

Automated detection of point mutations using fluorescent sequence trace subtraction.

Bonfield JK, Rada C, Staden R.

Nucleic Acids Res. 1998 Jul 15;26(14):3404-9.

4.

Adjust quality scores from alignment and improve sequencing accuracy.

Li M, Nordborg M, Li LM.

Nucleic Acids Res. 2004 Sep 30;32(17):5183-91. Print 2004.

5.

DNA sequence confidence estimation.

Lipshutz RJ, Taverner F, Hennessy K, Hartzell G, Davis R.

Genomics. 1994 Feb;19(3):417-24.

PMID:
8188283
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8.

Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Ewing B, Hillier L, Wendl MC, Green P.

Genome Res. 1998 Mar;8(3):175-85.

9.

BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing.

Kao WC, Stevens K, Song YS.

Genome Res. 2009 Oct;19(10):1884-95. doi: 10.1101/gr.095299.109. Epub 2009 Aug 6.

10.
11.
12.

Effects of sample re-sequencing and trimming on the quality and size of assembled consensus sequences.

Prosdocimi F, Lopes DA, Peixoto FC, Mourão MM, Pacífico LG, Ribeiro RA, Ortega JM.

Genet Mol Res. 2007 Oct 5;6(4):756-65.

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14.

The genome reconstruction manager: a software environment for supporting high-throughput DNA sequencing.

Lawrence CB, Honda S, Parrott NW, Flood TC, Gu L, Zhang L, Jain M, Larson S, Myers EW.

Genomics. 1994 Sep 1;23(1):192-201.

PMID:
7829071
15.

A sequence assembly and editing program for efficient management of large projects.

Dear S, Staden R.

Nucleic Acids Res. 1991 Jul 25;19(14):3907-11.

16.

Accuracy assessment of diploid consensus sequences.

Kim JH, Waterman MS, Li LM.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):88-97.

PMID:
17277416
17.

Viewing and editing assembled sequences using Consed.

Gordon D.

Curr Protoc Bioinformatics. 2003 Aug;Chapter 11:Unit11.2. doi: 10.1002/0471250953.bi1102s02.

PMID:
18428695
18.

A trace display and editing program for data from fluorescence based sequencing machines.

Gleeson T, Hillier L.

Nucleic Acids Res. 1991 Dec 11;19(23):6481-3.

19.

[Study of numerical mapping methods for DNA sequences].

Nini R, Lijun Q.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2005 Aug;22(4):681-5. Chinese.

PMID:
16156249
20.

GEL, a DNA sequencing project management system.

Clayton J, Kedes L.

Nucleic Acids Res. 1982 Jan 11;10(1):305-21.

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