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Results: 1 to 20 of 121

1.

MMDB: an ASN.1 specification for macromolecular structure.

Ohkawa H, Ostell J, Bryant S.

Proc Int Conf Intell Syst Mol Biol. 1995;3:259-67.

PMID:
7584445
[PubMed - indexed for MEDLINE]
2.

A comparative view at comprehensive information resources on three-dimensional structures of biological macro-molecules.

Hühne R, Koch FT, Sühnel J.

Brief Funct Genomic Proteomic. 2007 Sep;6(3):220-39. Epub 2007 Oct 23.

PMID:
17956938
[PubMed - indexed for MEDLINE]
Free Article
3.

NRL-3D: a sequence-structure database derived from the protein data bank (PDB) and searchable within the PIR environment.

Pattabiraman N, Namboodiri K, Lowrey A, Gaber BP.

Protein Seq Data Anal. 1990 Oct;3(5):387-405.

PMID:
2259697
[PubMed - indexed for MEDLINE]
4.

MMDB: 3D structure data in Entrez.

Wang Y, Addess KJ, Geer L, Madej T, Marchler-Bauer A, Zimmerman D, Bryant SH.

Nucleic Acids Res. 2000 Jan 1;28(1):243-5.

PMID:
10592236
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

SESAM: a relational database for structure and sequence of macromolecules.

Huysmans M, Richelle J, Wodak SJ.

Proteins. 1991;11(1):59-76.

PMID:
1961702
[PubMed - indexed for MEDLINE]
7.

SS3D-P2: a three dimensional substructure search program for protein motifs based on secondary structure elements.

Kato H, Takahashi Y.

Comput Appl Biosci. 1997 Dec;13(6):593-600.

PMID:
9475987
[PubMed - indexed for MEDLINE]
8.

Simple sequences are rare in the Protein Data Bank.

Huntley MA, Golding GB.

Proteins. 2002 Jul 1;48(1):134-40.

PMID:
12012345
[PubMed - indexed for MEDLINE]
9.

Automatic annotation of BIND molecular interactions from three-dimensional structures.

Salama JJ, Donaldson I, Hogue CW.

Biopolymers. 2001-2002;61(2):111-20.

PMID:
11987160
[PubMed - indexed for MEDLINE]
10.

Using the tools and resources of the RCSB protein data bank.

Dutta S, M Berman H, F Bluhm W.

Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:Unit1.9. doi: 10.1002/0471250953.bi0109s20.

PMID:
18428680
[PubMed - indexed for MEDLINE]
11.

The HSSP database of protein structure-sequence alignments.

Sander C, Schneider R.

Nucleic Acids Res. 1994 Sep;22(17):3597-9.

PMID:
7937066
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

AS2TS system for protein structure modeling and analysis.

Zemla A, Zhou CE, Slezak T, Kuczmarski T, Rama D, Torres C, Sawicka D, Barsky D.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W111-5.

PMID:
15980437
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Similarity searching in databases of three-dimensional molecules and macromolecules.

Artymiuk PJ, Bath PA, Grindley HM, Pepperrell CA, Poirrette AR, Rice DW, Thorner DA, Wild DJ, Willett P, Allen FH, et al.

J Chem Inf Comput Sci. 1992 Nov-Dec;32(6):617-30.

PMID:
1474109
[PubMed - indexed for MEDLINE]
14.

Homology modeling using simulated annealing of restrained molecular dynamics and conformational search calculations with CONGEN: application in predicting the three-dimensional structure of murine homeodomain Msx-1.

Li H, Tejero R, Monleon D, Bassolino-Klimas D, Abate-Shen C, Bruccoleri RE, Montelione GT.

Protein Sci. 1997 May;6(5):956-70.

PMID:
9144767
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Searching for pharmacophoric patterns in databases of three-dimensional chemical structures.

Willett P.

J Mol Recognit. 1995 Sep-Oct;8(5):290-303.

PMID:
8619950
[PubMed - indexed for MEDLINE]
16.

PRENRL_3D: a computer program for an automatic creation of NRL_3D, protein sequence-structure database, from the Protein Data Bank.

Kusunoki M, George DG, Namboodiri K, Pattabiraman N.

Protein Seq Data Anal. 1991 Dec;4(6):333-6.

PMID:
1812487
[PubMed - indexed for MEDLINE]
17.

SORTEZ: a relational translator for NCBI's ASN.1 database.

Hart KW, Searls DB, Overton GC.

Comput Appl Biosci. 1994 Jul;10(4):369-78.

PMID:
7804870
[PubMed - indexed for MEDLINE]
18.

Protein structure homology modeling using SWISS-MODEL workspace.

Bordoli L, Kiefer F, Arnold K, Benkert P, Battey J, Schwede T.

Nat Protoc. 2009;4(1):1-13. doi: 10.1038/nprot.2008.197.

PMID:
19131951
[PubMed - indexed for MEDLINE]
19.

The HSSP database of protein structure-sequence alignments.

Schneider R, de Daruvar A, Sander C.

Nucleic Acids Res. 1997 Jan 1;25(1):226-30.

PMID:
9016541
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Database resources of the National Center for Biotechnology Information.

Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Church DM, DiCuccio M, Edgar R, Federhen S, Helmberg W, Kenton DL, Khovayko O, Lipman DJ, Madden TL, Maglott DR, Ostell J, Pontius JU, Pruitt KD, Schuler GD, Schriml LM, Sequeira E, Sherry ST, Sirotkin K, Starchenko G, Suzek TO, Tatusov R, Tatusova TA, Wagner L, Yaschenko E.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D39-45.

PMID:
15608222
[PubMed - indexed for MEDLINE]
Free PMC Article

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