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Items: 1 to 20 of 92

1.

Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators.

Peng B, Chen HS, Mechanic LE, Racine B, Clarke J, Clarke L, Gillanders E, Feuer EJ.

Bioinformatics. 2013 Apr 15;29(8):1101-2. doi: 10.1093/bioinformatics/btt094. Epub 2013 Feb 23.

2.

Genetic data simulators and their applications: an overview.

Peng B, Chen HS, Mechanic LE, Racine B, Clarke J, Gillanders E, Feuer EJ.

Genet Epidemiol. 2015 Jan;39(1):2-10. doi: 10.1002/gepi.21876. Epub 2014 Dec 13.

3.

GENOMEPOP: a program to simulate genomes in populations.

Carvajal-Rodríguez A.

BMC Bioinformatics. 2008 Apr 30;9:223. doi: 10.1186/1471-2105-9-223.

4.

Comparing simulation results of SBML capable simulators.

Bergmann FT, Sauro HM.

Bioinformatics. 2008 Sep 1;24(17):1963-5. doi: 10.1093/bioinformatics/btn319. Epub 2008 Jun 25.

5.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

6.

QU-GENE: a simulation platform for quantitative analysis of genetic models.

Podlich DW, Cooper M.

Bioinformatics. 1998;14(7):632-53.

7.

Genetic simulation tools for post-genome wide association studies of complex diseases.

Chen HS, Hutter CM, Mechanic LE, Amos CI, Bafna V, Hauser ER, Hernandez RD, Li C, Liberles DA, McAllister K, Moore JH, Paltoo DN, Papanicolaou GJ, Peng B, Ritchie MD, Rosenfeld G, Witte JS, Gillanders EM, Feuer EJ.

Genet Epidemiol. 2015 Jan;39(1):11-9. doi: 10.1002/gepi.21870. Epub 2014 Nov 4.

8.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
9.

OptFlux: an open-source software platform for in silico metabolic engineering.

Rocha I, Maia P, Evangelista P, Vilaça P, Soares S, Pinto JP, Nielsen J, Patil KR, Ferreira EC, Rocha M.

BMC Syst Biol. 2010 Apr 19;4:45. doi: 10.1186/1752-0509-4-45.

10.

phenosim--A software to simulate phenotypes for testing in genome-wide association studies.

Günther T, Gawenda I, Schmid KJ.

BMC Bioinformatics. 2011 Jun 29;12:265. doi: 10.1186/1471-2105-12-265.

11.

GeNESiS: gene network evolution simulation software.

Kratz A, Tomita M, Krishnan A.

BMC Bioinformatics. 2008 Dec 16;9:541. doi: 10.1186/1471-2105-9-541.

12.

BOV--a web-based BLAST output visualization tool.

Gollapudi R, Revanna KV, Hemmerich C, Schaack S, Dong Q.

BMC Genomics. 2008 Sep 15;9:414. doi: 10.1186/1471-2164-9-414.

13.

GENOME: a rapid coalescent-based whole genome simulator.

Liang L, Zöllner S, Abecasis GR.

Bioinformatics. 2007 Jun 15;23(12):1565-7. Epub 2007 Apr 25.

14.

TreesimJ: a flexible, forward time population genetic simulator.

O'Fallon B.

Bioinformatics. 2010 Sep 1;26(17):2200-1. doi: 10.1093/bioinformatics/btq355. Epub 2010 Jul 29.

15.

An overview of population genetic data simulation.

Yuan X, Miller DJ, Zhang J, Herrington D, Wang Y.

J Comput Biol. 2012 Jan;19(1):42-54. doi: 10.1089/cmb.2010.0188. Epub 2011 Dec 9. Review.

16.

ALF--a simulation framework for genome evolution.

Dalquen DA, Anisimova M, Gonnet GH, Dessimoz C.

Mol Biol Evol. 2012 Apr;29(4):1115-23. doi: 10.1093/molbev/msr268. Epub 2011 Dec 8.

17.

SerbGO: searching for the best GO tool.

Mosquera JL, Sánchez-Pla A.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W368-71. doi: 10.1093/nar/gkn256. Epub 2008 May 14.

18.

SNAP: workbench management tool for evolutionary population genetic analysis.

Price EW, Carbone I.

Bioinformatics. 2005 Feb 1;21(3):402-4. Epub 2004 Sep 7.

19.

Computer simulations: tools for population and evolutionary genetics.

Hoban S, Bertorelle G, Gaggiotti OE.

Nat Rev Genet. 2012 Jan 10;13(2):110-22. doi: 10.1038/nrg3130. Review.

PMID:
22230817
20.

A simulation test bed for hypotheses of genome evolution.

Beiko RG, Charlebois RL.

Bioinformatics. 2007 Apr 1;23(7):825-31. Epub 2007 Jan 31.

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