Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 117

Similar articles for PubMed (Select 23065606)

1.

Bioinformatics approaches and software for detection of secondary metabolic gene clusters.

Fedorova ND, Moktali V, Medema MH.

Methods Mol Biol. 2012;944:23-45. doi: 10.1007/978-1-62703-122-6_2.

PMID:
23065606
2.

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Medema MH, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46. doi: 10.1093/nar/gkr466. Epub 2011 Jun 14.

3.

CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters.

Weber T, Rausch C, Lopez P, Hoof I, Gaykova V, Huson DH, Wohlleben W.

J Biotechnol. 2009 Mar 10;140(1-2):13-7.

PMID:
19297688
4.

antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.

Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, Takano E, Weber T.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W204-12. doi: 10.1093/nar/gkt449. Epub 2013 Jun 3.

5.

Phylogenetic approaches to natural product structure prediction.

Ziemert N, Jensen PR.

Methods Enzymol. 2012;517:161-82. doi: 10.1016/B978-0-12-404634-4.00008-5.

PMID:
23084938
6.

SMURF: Genomic mapping of fungal secondary metabolite clusters.

Khaldi N, Seifuddin FT, Turner G, Haft D, Nierman WC, Wolfe KH, Fedorova ND.

Fungal Genet Biol. 2010 Sep;47(9):736-41. doi: 10.1016/j.fgb.2010.06.003. Epub 2010 Jun 8.

7.

MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.

Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M.

PLoS One. 2013 Dec 31;8(12):e84028. doi: 10.1371/journal.pone.0084028. eCollection 2013.

8.

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae.

Inglis DO, Binkley J, Skrzypek MS, Arnaud MB, Cerqueira GC, Shah P, Wymore F, Wortman JR, Sherlock G.

BMC Microbiol. 2013 Apr 26;13:91. doi: 10.1186/1471-2180-13-91.

9.

Strategies to unravel the function of orphan biosynthesis pathways: recent examples and future prospects.

Gross H.

Appl Microbiol Biotechnol. 2007 May;75(2):267-77. Epub 2007 Mar 6. Review.

PMID:
17340107
10.
11.

In silico tools for the analysis of antibiotic biosynthetic pathways.

Weber T.

Int J Med Microbiol. 2014 May;304(3-4):230-5. doi: 10.1016/j.ijmm.2014.02.001. Epub 2014 Feb 19. Review.

PMID:
24631213
12.

A genomic approach to the cryptic secondary metabolome of the anaerobic world.

Letzel AC, Pidot SJ, Hertweck C.

Nat Prod Rep. 2013 Mar;30(3):392-428. doi: 10.1039/c2np20103h. Epub 2012 Dec 21. Review.

PMID:
23263685
13.

DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters.

Ichikawa N, Sasagawa M, Yamamoto M, Komaki H, Yoshida Y, Yamazaki S, Fujita N.

Nucleic Acids Res. 2013 Jan;41(Database issue):D408-14. doi: 10.1093/nar/gks1177. Epub 2012 Nov 26.

14.

Regulation of fungal secondary metabolism.

Brakhage AA.

Nat Rev Microbiol. 2013 Jan;11(1):21-32. doi: 10.1038/nrmicro2916. Epub 2012 Nov 26. Review.

PMID:
23178386
15.

In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites.

Ansari MZ, Sharma J, Gokhale RS, Mohanty D.

BMC Bioinformatics. 2008 Oct 25;9:454. doi: 10.1186/1471-2105-9-454.

16.
17.

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

Fujibuchi W, Ogata H, Matsuda H, Kanehisa M.

Nucleic Acids Res. 2000 Oct 15;28(20):4029-36.

18.

SEARCHGTr: a program for analysis of glycosyltransferases involved in glycosylation of secondary metabolites.

Kamra P, Gokhale RS, Mohanty D.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W220-5.

19.

Type III polyketide synthases in natural product biosynthesis.

Yu D, Xu F, Zeng J, Zhan J.

IUBMB Life. 2012 Apr;64(4):285-95. doi: 10.1002/iub.1005. Epub 2012 Feb 23. Review.

PMID:
22362498
20.

dndDB: a database focused on phosphorothioation of the DNA backbone.

Ou HY, He X, Shao Y, Tai C, Rajakumar K, Deng Z.

PLoS One. 2009;4(4):e5132. doi: 10.1371/journal.pone.0005132. Epub 2009 Apr 9.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk