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Results: 1 to 20 of 126

Similar articles for PubMed (Select 23028291)

1.

Tissue-specific functional networks for prioritizing phenotype and disease genes.

Guan Y, Gorenshteyn D, Burmeister M, Wong AK, Schimenti JC, Handel MA, Bult CJ, Hibbs MA, Troyanskaya OG.

PLoS Comput Biol. 2012;8(9):e1002694. doi: 10.1371/journal.pcbi.1002694. Epub 2012 Sep 27.

2.

Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks.

Magger O, Waldman YY, Ruppin E, Sharan R.

PLoS Comput Biol. 2012;8(9):e1002690. doi: 10.1371/journal.pcbi.1002690. Epub 2012 Sep 27.

3.

A genomewide functional network for the laboratory mouse.

Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000165. doi: 10.1371/journal.pcbi.1000165.

4.

Identifying gene-disease associations using centrality on a literature mined gene-interaction network.

Ozgür A, Vu T, Erkan G, Radev DR.

Bioinformatics. 2008 Jul 1;24(13):i277-85. doi: 10.1093/bioinformatics/btn182.

5.

Global human tissue profiling and protein network analysis reveals distinct levels of transcriptional germline-specificity and identifies target genes for male infertility.

Chalmel F, Lardenois A, Evrard B, Mathieu R, Feig C, Demougin P, Gattiker A, Schulze W, Jégou B, Kirchhoff C, Primig M.

Hum Reprod. 2012 Nov;27(11):3233-48. doi: 10.1093/humrep/des301. Epub 2012 Aug 27.

6.

Increasing the power to detect causal associations by combining genotypic and expression data in segregating populations.

Zhu J, Wiener MC, Zhang C, Fridman A, Minch E, Lum PY, Sachs JR, Schadt EE.

PLoS Comput Biol. 2007 Apr 13;3(4):e69. Epub 2007 Feb 27.

7.

Discovering functional interaction patterns in protein-protein interaction networks.

Turanalp ME, Can T.

BMC Bioinformatics. 2008 Jun 11;9:276. doi: 10.1186/1471-2105-9-276.

8.

BisoGenet: a new tool for gene network building, visualization and analysis.

Martin A, Ochagavia ME, Rabasa LC, Miranda J, Fernandez-de-Cossio J, Bringas R.

BMC Bioinformatics. 2010 Feb 17;11:91. doi: 10.1186/1471-2105-11-91.

9.

Detecting disease genes based on semi-supervised learning and protein-protein interaction networks.

Nguyen TP, Ho TB.

Artif Intell Med. 2012 Jan;54(1):63-71. doi: 10.1016/j.artmed.2011.09.003. Epub 2011 Oct 14.

PMID:
22000346
10.

Integration of genomic data for inferring protein complexes from global protein-protein interaction networks.

Zheng H, Wang H, Glass DH.

IEEE Trans Syst Man Cybern B Cybern. 2008 Feb;38(1):5-16. doi: 10.1109/TSMCB.2007.908912.

PMID:
18270078
11.

NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems.

Schmidt MC, Rocha AM, Padmanabhan K, Shpanskaya Y, Banfield J, Scott K, Mihelcic JR, Samatova NF.

PLoS Comput Biol. 2012;8(5):e1002490. doi: 10.1371/journal.pcbi.1002490. Epub 2012 May 10.

12.

"Guilt by association" is the exception rather than the rule in gene networks.

Gillis J, Pavlidis P.

PLoS Comput Biol. 2012;8(3):e1002444. doi: 10.1371/journal.pcbi.1002444. Epub 2012 Mar 29.

13.

POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data.

Gonçalves JP, Grãos M, Valente AX.

J R Soc Interface. 2009 Oct 6;6(39):881-96. doi: 10.1098/rsif.2008.0407. Epub 2008 Nov 28.

14.

Fractal genomics modeling: a new approach to genomic analysis and biomarker discovery.

Shaw S, Shapshak P.

Proc IEEE Comput Syst Bioinform Conf. 2004:9-18.

PMID:
16456986
15.

An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.

Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM.

BMC Syst Biol. 2008 Apr 4;2:31. doi: 10.1186/1752-0509-2-31.

16.

Semantic integration to identify overlapping functional modules in protein interaction networks.

Cho YR, Hwang W, Ramanathan M, Zhang A.

BMC Bioinformatics. 2007 Jul 24;8:265.

17.

Alignment and integration of complex networks by hypergraph-based spectral clustering.

Michoel T, Nachtergaele B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Nov;86(5 Pt 2):056111. Epub 2012 Nov 26.

PMID:
23214847
18.
19.

Functional annotation from predicted protein interaction networks.

McDermott J, Bumgarner R, Samudrala R.

Bioinformatics. 2005 Aug 1;21(15):3217-26. Epub 2005 May 26.

20.

Gene prioritization for livestock diseases by data integration.

Jiang L, Sørensen P, Thomsen B, Edwards SM, Skarman A, Røntved CM, Lund MS, Workman CT.

Physiol Genomics. 2012 Mar 1;44(5):305-17. doi: 10.1152/physiolgenomics.00047.2011. Epub 2012 Jan 10.

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