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Results: 1 to 20 of 126

1.

QUAliFiER: an automated pipeline for quality assessment of gated flow cytometry data.

Finak G, Jiang W, Pardo J, Asare A, Gottardo R.

BMC Bioinformatics. 2012 Sep 28;13:252. doi: 10.1186/1471-2105-13-252.

PMID:
23020243
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Optimizing transformations for automated, high throughput analysis of flow cytometry data.

Finak G, Perez JM, Weng A, Gottardo R.

BMC Bioinformatics. 2010 Nov 4;11:546. doi: 10.1186/1471-2105-11-546.

PMID:
21050468
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

WebFlow: a software package for high-throughput analysis of flow cytometry data.

Hammer MM, Kotecha N, Irish JM, Nolan GP, Krutzik PO.

Assay Drug Dev Technol. 2009 Feb;7(1):44-55. doi: 10.1089/adt.2008.174.

PMID:
19187010
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Flow cytometry bioinformatics.

O'Neill K, Aghaeepour N, Spidlen J, Brinkman R.

PLoS Comput Biol. 2013;9(12):e1003365. doi: 10.1371/journal.pcbi.1003365. Epub 2013 Dec 5.

PMID:
24363631
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

flowClust: a Bioconductor package for automated gating of flow cytometry data.

Lo K, Hahne F, Brinkman RR, Gottardo R.

BMC Bioinformatics. 2009 May 14;10:145. doi: 10.1186/1471-2105-10-145.

PMID:
19442304
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Data quality assessment of ungated flow cytometry data in high throughput experiments.

Le Meur N, Rossini A, Gasparetto M, Smith C, Brinkman RR, Gentleman R.

Cytometry A. 2007 Jun;71(6):393-403.

PMID:
17366638
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

FIND: a new software tool and development platform for enhanced multicolor flow analysis.

Dabdoub SM, Ray WC, Justice SS.

BMC Bioinformatics. 2011 May 10;12:145. doi: 10.1186/1471-2105-12-145.

PMID:
21569257
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Bridging the Divide between Manual Gating and Bioinformatics with the Bioconductor Package flowFlowJo.

Gosink JJ, Means GD, Rees WA, Su C, Rand HA.

Adv Bioinformatics. 2009:809469. doi: 10.1155/2009/809469. Epub 2009 Oct 7.

PMID:
19956421
[PubMed]
Free PMC Article
9.

Per-channel basis normalization methods for flow cytometry data.

Hahne F, Khodabakhshi AH, Bashashati A, Wong CJ, Gascoyne RD, Weng AP, Seyfert-Margolis V, Bourcier K, Asare A, Lumley T, Gentleman R, Brinkman RR.

Cytometry A. 2010 Feb;77(2):121-31. doi: 10.1002/cyto.a.20823.

PMID:
19899135
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A software framework enabling analysis of plate-based flow cytometry data for high-throughput screening.

Stanton RA, Escobar S, Elliott GS.

Assay Drug Dev Technol. 2010 Apr;8(2):228-37. doi: 10.1089/adt.2009.0227.

PMID:
20035617
[PubMed - indexed for MEDLINE]
11.

Development of an automated analysis system for data from flow cytometric intracellular cytokine staining assays from clinical vaccine trials.

Shulman N, Bellew M, Snelling G, Carter D, Huang Y, Li H, Self SG, McElrath MJ, De Rosa SC.

Cytometry A. 2008 Sep;73(9):847-56. doi: 10.1002/cyto.a.20600.

PMID:
18615598
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison.

Sioson AA, Mane SP, Li P, Sha W, Heath LS, Bohnert HJ, Grene R.

BMC Bioinformatics. 2006 Apr 20;7:215.

PMID:
16626497
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An automated analysis of highly complex flow cytometry-based proteomic data.

Stuchlý J, Kanderová V, Fišer K, Cerná D, Holm A, Wu W, Hrušák O, Lund-Johansen F, Kalina T.

Cytometry A. 2012 Feb;81(2):120-9. doi: 10.1002/cyto.a.22011. Epub 2011 Dec 28.

PMID:
22213549
[PubMed - indexed for MEDLINE]
Free Article
14.

"Virtual flow cytometry" of immunostained lymphocytes on microscopic tissue slides: iHCFlow tissue cytometry.

Cualing HD, Zhong E, Moscinski L.

Cytometry B Clin Cytom. 2007 Jan 15;72(1):63-76.

PMID:
17133379
[PubMed - indexed for MEDLINE]
Free Article
15.
16.

flowCore: a Bioconductor package for high throughput flow cytometry.

Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, Sarkar D, Spidlen J, Strain E, Gentleman R.

BMC Bioinformatics. 2009 Apr 9;10:106. doi: 10.1186/1471-2105-10-106.

PMID:
19358741
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Analysis of High-Throughput Flow Cytometry Data Using plateCore.

Strain E, Hahne F, Brinkman RR, Haaland P.

Adv Bioinformatics. 2009:356141. doi: 10.1155/2009/356141. Epub 2009 Oct 11.

PMID:
19956418
[PubMed]
Free PMC Article
18.

A flow cytometry-based workflow for detection and quantification of anti-plasmodial antibodies in vaccinated and naturally exposed individuals.

Ajua A, Engleitner T, Esen M, Theisen M, Issifou S, Mordmüller B.

Malar J. 2012 Nov 6;11:367. doi: 10.1186/1475-2875-11-367.

PMID:
23130649
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

preAssemble: a tool for automatic sequencer trace data processing.

Adzhubei AA, Laerdahl JK, Vlasova AV.

BMC Bioinformatics. 2006 Jan 17;7:22.

PMID:
16417643
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

High-throughput identification, database storage and analysis of SNPs in EST sequences.

Useche FJ, Gao G, Harafey M, Rafalski A.

Genome Inform. 2001;12:194-203.

PMID:
11791238
[PubMed - indexed for MEDLINE]

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