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Items: 1 to 20 of 93

1.

An effort to use human-based exome capture methods to analyze chimpanzee and macaque exomes.

Jin X, He M, Ferguson B, Meng Y, Ouyang L, Ren J, Mailund T, Sun F, Sun L, Shen J, Zhuo M, Song L, Wang J, Ling F, Zhu Y, Hvilsom C, Siegismund H, Liu X, Gong Z, Ji F, Wang X, Liu B, Zhang Y, Hou J, Wang J, Zhao H, Wang Y, Fang X, Zhang G, Wang J, Zhang X, Schierup MH, Du H, Wang J, Wang X.

PLoS One. 2012;7(7):e40637. doi: 10.1371/journal.pone.0040637. Epub 2012 Jul 27.

2.

Expanding whole exome resequencing into non-human primates.

Vallender EJ.

Genome Biol. 2011 Sep 14;12(9):R87. doi: 10.1186/gb-2011-12-9-r87.

3.

Single nucleotide polymorphisms (SNPs) are highly conserved in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques.

Street SL, Kyes RC, Grant R, Ferguson B.

BMC Genomics. 2007 Dec 31;8:480. doi: 10.1186/1471-2164-8-480.

4.

Progressive inactivation of the haploid expressed gene for the sperm-specific endozepine-like peptide (ELP) through primate evolution.

Ivell R, Pusch W, Balvers M, Valentin M, Walther N, Weinbauer G.

Gene. 2000 Sep 19;255(2):335-45.

PMID:
11024294
5.

Large-scale polymorphism discovery in macaque G-protein coupled receptors.

Goswami DB, Ogawa LM, Ward JM, Miller GM, Vallender EJ.

BMC Genomics. 2013 Oct 11;14:703. doi: 10.1186/1471-2164-14-703.

6.

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection.

George RD, McVicker G, Diederich R, Ng SB, MacKenzie AP, Swanson WJ, Shendure J, Thomas JH.

Genome Res. 2011 Oct;21(10):1686-94. doi: 10.1101/gr.121327.111. Epub 2011 Jul 27.

7.

Extensive Mhc-DQB variation in humans and non-human primate species.

Otting N, de Groot NG, Doxiadis GG, Bontrop RE.

Immunogenetics. 2002 Jul;54(4):230-9. Epub 2002 Jun 20.

PMID:
12136334
8.

Comparison of allele O sequences of the human and non-human primate ABO system.

Kermarrec N, Roubinet F, Apoil PA, Blancher A.

Immunogenetics. 1999 Jun;49(6):517-26.

PMID:
10380696
9.

Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22.

Volfovsky N, Oleksyk TK, Cruz KC, Truelove AL, Stephens RM, Smith MW.

BMC Genomics. 2009 Jan 26;10:51. doi: 10.1186/1471-2164-10-51.

10.

Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta.

Osada N, Hashimoto K, Kameoka Y, Hirata M, Tanuma R, Uno Y, Inoue I, Hida M, Suzuki Y, Sugano S, Terao K, Kusuda J, Takahashi I.

BMC Genomics. 2008 Feb 24;9:90. doi: 10.1186/1471-2164-9-90.

11.

High divergence in primate-specific duplicated regions: human and chimpanzee chorionic gonadotropin beta genes.

Hallast P, Saarela J, Palotie A, Laan M.

BMC Evol Biol. 2008 Jul 7;8:195. doi: 10.1186/1471-2148-8-195.

12.

Following the LINEs: an analysis of primate genomic variation at human-specific LINE-1 insertion sites.

Vincent BJ, Myers JS, Ho HJ, Kilroy GE, Walker JA, Watkins WS, Jorde LB, Batzer MA.

Mol Biol Evol. 2003 Aug;20(8):1338-48. Epub 2003 May 30.

13.

Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.

Wetterbom A, Sevov M, Cavelier L, Bergström TF.

J Mol Evol. 2006 Nov;63(5):682-90. Epub 2006 Oct 29.

PMID:
17075697
14.

Comparative analysis of copy number variation in primate genomes.

Kehrer-Sawatzki H, Cooper DN.

Cytogenet Genome Res. 2008;123(1-4):288-96. doi: 10.1159/000184720. Epub 2009 Mar 11.

PMID:
19287167
15.

Exome sequencing of a multigenerational human pedigree.

Hedges DJ, Burges D, Powell E, Almonte C, Huang J, Young S, Boese B, Schmidt M, Pericak-Vance MA, Martin E, Zhang X, Harkins TT, Züchner S.

PLoS One. 2009 Dec 14;4(12):e8232. doi: 10.1371/journal.pone.0008232. Erratum in: PLoS One. 2009;4(12). doi: 10.1371/annotation/b0fe9dd5-16e1-4b50-b590-263518fbd5eb. Hedges, Dale [corrected to Hedges, Dale J].

16.
17.

Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques.

Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson JR, Meng Y, Bai Y, Wang J, Zhuo M, Wang T, Huang Y, Wei L, Li J, Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, Liu X, Ball EV, An N, Huang Q, Zhang Y, Fan W, Zhang X, Li Y, Wang W, Katze MG, Su B, Nielsen R, Yang H, Wang J, Wang X, Wang J.

Nat Biotechnol. 2011 Oct 16;29(11):1019-23. doi: 10.1038/nbt.1992.

PMID:
22002653
18.

Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing.

Bataillon T, Duan J, Hvilsom C, Jin X, Li Y, Skov L, Glemin S, Munch K, Jiang T, Qian Y, Hobolth A, Wang J, Mailund T, Siegismund HR, Schierup MH.

Genome Biol Evol. 2015 Mar 30;7(4):1122-32. doi: 10.1093/gbe/evv058.

19.

A BAC-based contig map of the cynomolgus macaque (Macaca fascicularis) major histocompatibility complex genomic region.

Watanabe A, Shiina T, Shimizu S, Hosomichi K, Yanagiya K, Kita YF, Kimura T, Soeda E, Torii R, Ogasawara K, Kulski JK, Inoko H.

Genomics. 2007 Mar;89(3):402-12. Epub 2006 Dec 14.

20.

Evolutionary and ontogenetic changes in RNA editing in human, chimpanzee, and macaque brains.

Li Z, Bammann H, Li M, Liang H, Yan Z, Phoebe Chen YP, Zhao M, Khaitovich P.

RNA. 2013 Dec;19(12):1693-702. doi: 10.1261/rna.039206.113. Epub 2013 Oct 23.

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