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Results: 1 to 20 of 125

1.

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.

Ramsköld D, Luo S, Wang YC, Li R, Deng Q, Faridani OR, Daniels GA, Khrebtukova I, Loring JF, Laurent LC, Schroth GP, Sandberg R.

Nat Biotechnol. 2012 Aug;30(8):777-82.

PMID:
22820318
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Transcriptome sequencing of single cells with Smart-Seq.

Goetz JJ, Trimarchi JM.

Nat Biotechnol. 2012 Aug;30(8):763-5. doi: 10.1038/nbt.2325. No abstract available.

PMID:
22871714
[PubMed - indexed for MEDLINE]
3.

Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.

Brooks MJ, Rajasimha HK, Roger JE, Swaroop A.

Mol Vis. 2011;17:3034-54. Epub 2011 Nov 23.

PMID:
22162623
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.

Islam S, Kjällquist U, Moliner A, Zajac P, Fan JB, Lönnerberg P, Linnarsson S.

Genome Res. 2011 Jul;21(7):1160-7. doi: 10.1101/gr.110882.110. Epub 2011 May 4.

PMID:
21543516
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays.

Bottomly D, Walter NA, Hunter JE, Darakjian P, Kawane S, Buck KJ, Searles RP, Mooney M, McWeeney SK, Hitzemann R.

PLoS One. 2011 Mar 24;6(3):e17820. doi: 10.1371/journal.pone.0017820.

PMID:
21455293
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.

Raghavachari N, Barb J, Yang Y, Liu P, Woodhouse K, Levy D, O'Donnell CJ, Munson PJ, Kato GJ.

BMC Med Genomics. 2012 Jun 29;5:28. doi: 10.1186/1755-8794-5-28.

PMID:
22747986
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.

Sengupta S, Bolin JM, Ruotti V, Nguyen BK, Thomson JA, Elwell AL, Stewart R.

J Vis Exp. 2011 Oct 27;(56):e3340. doi: 10.3791/3340.

PMID:
22064688
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Full-length RNA-seq from single cells using Smart-seq2.

Picelli S, Faridani OR, Björklund AK, Winberg G, Sagasser S, Sandberg R.

Nat Protoc. 2014 Jan;9(1):171-81. doi: 10.1038/nprot.2014.006. Epub 2014 Jan 2.

PMID:
24385147
[PubMed - indexed for MEDLINE]
9.

RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering.

Sîrbu A, Kerr G, Crane M, Ruskin HJ.

PLoS One. 2012;7(12):e50986. doi: 10.1371/journal.pone.0050986. Epub 2012 Dec 10.

PMID:
23251411
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq.

Beane J, Vick J, Schembri F, Anderlind C, Gower A, Campbell J, Luo L, Zhang XH, Xiao J, Alekseyev YO, Wang S, Levy S, Massion PP, Lenburg M, Spira A.

Cancer Prev Res (Phila). 2011 Jun;4(6):803-17. doi: 10.1158/1940-6207.CAPR-11-0212.

PMID:
21636547
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Exploring the gonad transcriptome of two extreme male pigs with RNA-seq.

Esteve-Codina A, Kofler R, Palmieri N, Bussotti G, Notredame C, Pérez-Enciso M.

BMC Genomics. 2011 Nov 8;12:552. doi: 10.1186/1471-2164-12-552.

PMID:
22067327
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

RNA-Seq analysis to capture the transcriptome landscape of a single cell.

Tang F, Barbacioru C, Nordman E, Li B, Xu N, Bashkirov VI, Lao K, Surani MA.

Nat Protoc. 2010 Mar;5(3):516-35. doi: 10.1038/nprot.2009.236. Epub 2010 Feb 25.

PMID:
20203668
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Zinc-mediated RNA fragmentation allows robust transcript reassembly upon whole transcriptome RNA-Seq.

Wery M, Descrimes M, Thermes C, Gautheret D, Morillon A.

Methods. 2013 Sep 1;63(1):25-31. doi: 10.1016/j.ymeth.2013.03.009. Epub 2013 Mar 21.

PMID:
23523657
[PubMed - indexed for MEDLINE]
14.

Characterizing short read sequencing for gene discovery and RNA-Seq analysis in Crassostrea gigas.

Gavery MR, Roberts SB.

Comp Biochem Physiol Part D Genomics Proteomics. 2012 Jun;7(2):94-9. doi: 10.1016/j.cbd.2011.12.003. Epub 2011 Dec 29.

PMID:
22244882
[PubMed - indexed for MEDLINE]
15.

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.

Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y.

Genome Res. 2008 Sep;18(9):1509-17. doi: 10.1101/gr.079558.108. Epub 2008 Jun 11.

PMID:
18550803
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Retinal transcriptome profiling by directional next-generation sequencing using 100 ng of total RNA.

Brooks MJ, Rajasimha HK, Swaroop A.

Methods Mol Biol. 2012;884:319-34. doi: 10.1007/978-1-61779-848-1_23.

PMID:
22688717
[PubMed - indexed for MEDLINE]
17.

Analysis of transcriptome complexity through RNA sequencing in normal and failing murine hearts.

Lee JH, Gao C, Peng G, Greer C, Ren S, Wang Y, Xiao X.

Circ Res. 2011 Dec 9;109(12):1332-41. doi: 10.1161/CIRCRESAHA.111.249433. Epub 2011 Oct 27.

PMID:
22034492
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus.

Higgins J, Magusin A, Trick M, Fraser F, Bancroft I.

BMC Genomics. 2012 Jun 15;13:247. doi: 10.1186/1471-2164-13-247.

PMID:
22703051
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets.

Xu X, Zhang Y, Williams J, Antoniou E, McCombie WR, Wu S, Zhu W, Davidson NO, Denoya P, Li E.

BMC Bioinformatics. 2013;14 Suppl 9:S1. doi: 10.1186/1471-2105-14-S9-S1. Epub 2013 Jun 28.

PMID:
23902433
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species.

Liu S, Lin L, Jiang P, Wang D, Xing Y.

Nucleic Acids Res. 2011 Jan;39(2):578-88. doi: 10.1093/nar/gkq817. Epub 2010 Sep 22.

PMID:
20864445
[PubMed - indexed for MEDLINE]
Free PMC Article

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