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Results: 1 to 20 of 98

Similar articles for PubMed (Select 22817891)

1.

Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions.

Bhatt DM, Pandya-Jones A, Tong AJ, Barozzi I, Lissner MM, Natoli G, Black DL, Smale ST.

Cell. 2012 Jul 20;150(2):279-90. doi: 10.1016/j.cell.2012.05.043.

2.

The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3' processing.

Abe K, Yamamoto R, Franke V, Cao M, Suzuki Y, Suzuki MG, Vlahovicek K, Svoboda P, Schultz RM, Aoki F.

EMBO J. 2015 Jun 3;34(11):1523-37. doi: 10.15252/embj.201490648. Epub 2015 Apr 20.

PMID:
25896510
3.

High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies.

Rabani M, Raychowdhury R, Jovanovic M, Rooney M, Stumpo DJ, Pauli A, Hacohen N, Schier AF, Blackshear PJ, Friedman N, Amit I, Regev A.

Cell. 2014 Dec 18;159(7):1698-710. doi: 10.1016/j.cell.2014.11.015. Epub 2014 Dec 11.

PMID:
25497548
4.

Transcriptional control of inflammatory responses.

Smale ST, Natoli G.

Cold Spring Harb Perspect Biol. 2014 Sep 11;6(11):a016261. doi: 10.1101/cshperspect.a016261. Review.

PMID:
25213094
5.

Identification of alternative transcripts encoding the essential murine gammaherpesvirus lytic transactivator RTA.

Wakeman BS, Johnson LS, Paden CR, Gray KS, Virgin HW, Speck SH.

J Virol. 2014 May;88(10):5474-90. doi: 10.1128/JVI.03110-13. Epub 2014 Feb 26.

6.

Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum.

Siegel TN, Hon CC, Zhang Q, Lopez-Rubio JJ, Scheidig-Benatar C, Martins RM, Sismeiro O, Coppée JY, Scherf A.

BMC Genomics. 2014 Feb 22;15:150. doi: 10.1186/1471-2164-15-150.

7.

Divergent transcription is associated with promoters of transcriptional regulators.

Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, Zacarias-Cabeza J, Garibal MA, Koch F, Maqbool MA, Fenouil R, Loriod B, Holota H, Gut M, Gut I, Imbert J, Andrau JC, Puthier D, Spicuglia S.

BMC Genomics. 2013 Dec 23;14:914. doi: 10.1186/1471-2164-14-914.

8.

Pluripotency factors and Polycomb Group proteins repress aryl hydrocarbon receptor expression in murine embryonic stem cells.

Ko CI, Wang Q, Fan Y, Xia Y, Puga A.

Stem Cell Res. 2014 Jan;12(1):296-308. doi: 10.1016/j.scr.2013.11.007. Epub 2013 Nov 16.

9.

Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues.

Zaghlool A, Ameur A, Nyberg L, Halvardson J, Grabherr M, Cavelier L, Feuk L.

BMC Biotechnol. 2013 Nov 13;13:99. doi: 10.1186/1472-6750-13-99.

10.

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.

Zhang Y, Wong CH, Birnbaum RY, Li G, Favaro R, Ngan CY, Lim J, Tai E, Poh HM, Wong E, Mulawadi FH, Sung WK, Nicolis S, Ahituv N, Ruan Y, Wei CL.

Nature. 2013 Dec 12;504(7479):306-10. doi: 10.1038/nature12716. Epub 2013 Nov 10.

11.

Transcriptional regulation of immediate-early gene response by THOC5, a member of mRNA export complex, contributes to the M-CSF-induced macrophage differentiation.

Tran DD, Saran S, Dittrich-Breiholz O, Williamson AJ, Klebba-Färber S, Koch A, Kracht M, Whetton AD, Tamura T.

Cell Death Dis. 2013 Oct 24;4:e879. doi: 10.1038/cddis.2013.409.

12.

BCL-3 attenuation of TNFA expression involves an incoherent feed-forward loop regulated by chromatin structure.

Walker T, Adamson A, Jackson DA.

PLoS One. 2013 Oct 10;8(10):e77015. doi: 10.1371/journal.pone.0077015. eCollection 2013.

13.

Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons.

Khaladkar M, Buckley PT, Lee MT, Francis C, Eghbal MM, Chuong T, Suresh S, Kuhn B, Eberwine J, Kim J.

PLoS One. 2013 Oct 3;8(10):e76194. doi: 10.1371/journal.pone.0076194. eCollection 2013.

14.

RNA-seq characterization of spinal cord injury transcriptome in acute/subacute phases: a resource for understanding the pathology at the systems level.

Chen K, Deng S, Lu H, Zheng Y, Yang G, Kim D, Cao Q, Wu JQ.

PLoS One. 2013 Aug 9;8(8):e72567. doi: 10.1371/journal.pone.0072567. eCollection 2013.

15.

Type I IFNs downregulate myeloid cell IFN-γ receptor by inducing recruitment of an early growth response 3/NGFI-A binding protein 1 complex that silences ifngr1 transcription.

Kearney SJ, Delgado C, Eshleman EM, Hill KK, O'Connor BP, Lenz LL.

J Immunol. 2013 Sep 15;191(6):3384-92. doi: 10.4049/jimmunol.1203510. Epub 2013 Aug 9.

16.

Nucleotide receptor P2RX7 stimulation enhances LPS-induced interferon-β production in murine macrophages.

Gavala ML, Liu YP, Lenertz LY, Zeng L, Blanchette JB, Guadarrama AG, Denlinger LC, Bertics PJ, Smith JA.

J Leukoc Biol. 2013 Oct;94(4):759-68. doi: 10.1189/jlb.0712351. Epub 2013 Aug 2.

17.

Pairwise comparisons of ten porcine tissues identify differential transcriptional regulation at the gene, isoform, promoter and transcription start site level.

Farajzadeh L, Hornshøj H, Momeni J, Thomsen B, Larsen K, Hedegaard J, Bendixen C, Madsen LB.

Biochem Biophys Res Commun. 2013 Aug 23;438(2):346-52. doi: 10.1016/j.bbrc.2013.07.074. Epub 2013 Jul 27.

18.

Sumoylation at chromatin governs coordinated repression of a transcriptional program essential for cell growth and proliferation.

Neyret-Kahn H, Benhamed M, Ye T, Le Gras S, Cossec JC, Lapaquette P, Bischof O, Ouspenskaia M, Dasso M, Seeler J, Davidson I, Dejean A.

Genome Res. 2013 Oct;23(10):1563-79. doi: 10.1101/gr.154872.113. Epub 2013 Jul 26.

19.

Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression.

Pandya-Jones A, Bhatt DM, Lin CH, Tong AJ, Smale ST, Black DL.

RNA. 2013 Jun;19(6):811-27. doi: 10.1261/rna.039081.113. Epub 2013 Apr 24.

20.

BET protein function is required for inflammation: Brd2 genetic disruption and BET inhibitor JQ1 impair mouse macrophage inflammatory responses.

Belkina AC, Nikolajczyk BS, Denis GV.

J Immunol. 2013 Apr 1;190(7):3670-8. doi: 10.4049/jimmunol.1202838. Epub 2013 Feb 18.

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