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Similar articles for PubMed (Select 22806588)

1.

Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

Bolotin DA, Mamedov IZ, Britanova OV, Zvyagin IV, Shagin D, Ustyugova SV, Turchaninova MA, Lukyanov S, Lebedev YB, Chudakov DM.

Eur J Immunol. 2012 Nov;42(11):3073-83. doi: 10.1002/eji.201242517. Epub 2012 Sep 24.

PMID:
22806588
2.

Wrestling with the repertoire: the promise and perils of next generation sequencing for antigen receptors.

Baum PD, Venturi V, Price DA.

Eur J Immunol. 2012 Nov;42(11):2834-9. doi: 10.1002/eji.201242999.

PMID:
23108932
3.

Probing the T-cell receptor repertoire with deep sequencing.

Miconnet I.

Curr Opin HIV AIDS. 2012 Jan;7(1):64-70. doi: 10.1097/COH.0b013e32834ddcae. Review.

PMID:
22156841
4.

Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire.

Nguyen P, Ma J, Pei D, Obert C, Cheng C, Geiger TL.

BMC Genomics. 2011 Feb 11;12:106. doi: 10.1186/1471-2164-12-106.

5.

Sequencing technologies and genome sequencing.

Pareek CS, Smoczynski R, Tretyn A.

J Appl Genet. 2011 Nov;52(4):413-35. doi: 10.1007/s13353-011-0057-x. Epub 2011 Jun 23. Review.

6.

HLA typing by next-generation sequencing - getting closer to reality.

Gabriel C, Fürst D, Faé I, Wenda S, Zollikofer C, Mytilineos J, Fischer GF.

Tissue Antigens. 2014 Feb;83(2):65-75. doi: 10.1111/tan.12298. Review.

PMID:
24447174
7.

Next-generation sequencing and potential applications in fungal genomics.

Sanmiguel P.

Methods Mol Biol. 2011;722:51-60. doi: 10.1007/978-1-61779-040-9_4.

PMID:
21590412
8.

Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.

Scholz MB, Lo CC, Chain PS.

Curr Opin Biotechnol. 2012 Feb;23(1):9-15. doi: 10.1016/j.copbio.2011.11.013. Epub 2011 Dec 9. Review.

PMID:
22154470
9.

Massively parallel sequencing approaches for characterization of structural variation.

Koboldt DC, Larson DE, Chen K, Ding L, Wilson RK.

Methods Mol Biol. 2012;838:369-84. doi: 10.1007/978-1-61779-507-7_18. Review.

10.

Next-generation sequencing and its applications in molecular diagnostics.

Su Z, Ning B, Fang H, Hong H, Perkins R, Tong W, Shi L.

Expert Rev Mol Diagn. 2011 Apr;11(3):333-43. doi: 10.1586/erm.11.3. Review.

PMID:
21463242
11.

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y.

BMC Genomics. 2012 Jul 24;13:341. doi: 10.1186/1471-2164-13-341.

12.

Pollux: platform independent error correction of single and mixed genomes.

Marinier E, Brown DG, McConkey BJ.

BMC Bioinformatics. 2015 Jan 16;16:10. doi: 10.1186/s12859-014-0435-6.

13.

Library preparation methods for next-generation sequencing: tone down the bias.

van Dijk EL, Jaszczyszyn Y, Thermes C.

Exp Cell Res. 2014 Mar 10;322(1):12-20. doi: 10.1016/j.yexcr.2014.01.008. Epub 2014 Jan 15. Review.

PMID:
24440557
14.

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

Benichou J, Ben-Hamo R, Louzoun Y, Efroni S.

Immunology. 2012 Mar;135(3):183-91. doi: 10.1111/j.1365-2567.2011.03527.x. Review.

15.

Lane-by-lane sequencing using Illumina's Genome Analyzer II.

Gravina MT, Lin JH, Levine SS.

Biotechniques. 2013 May;54(5):265-9. doi: 10.2144/000114032.

16.

Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling.

Mamedov IZ, Britanova OV, Zvyagin IV, Turchaninova MA, Bolotin DA, Putintseva EV, Lebedev YB, Chudakov DM.

Front Immunol. 2013 Dec 23;4:456. doi: 10.3389/fimmu.2013.00456. eCollection 2013.

17.

Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling.

Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG.

Appl Environ Microbiol. 2014 Dec;80(24):7583-91. doi: 10.1128/AEM.02206-14. Epub 2014 Sep 26.

18.

A microfluidic DNA library preparation platform for next-generation sequencing.

Kim H, Jebrail MJ, Sinha A, Bent ZW, Solberg OD, Williams KP, Langevin SA, Renzi RF, Van De Vreugde JL, Meagher RJ, Schoeniger JS, Lane TW, Branda SS, Bartsch MS, Patel KD.

PLoS One. 2013 Jul 22;8(7):e68988. doi: 10.1371/journal.pone.0068988. Print 2013.

19.

Next-generation sequencing technologies and fragment assembly algorithms.

Lee H, Tang H.

Methods Mol Biol. 2012;855:155-74. doi: 10.1007/978-1-61779-582-4_5. Review.

PMID:
22407708
20.

Technology-specific error signatures in the 1000 Genomes Project data.

Nothnagel M, Herrmann A, Wolf A, Schreiber S, Platzer M, Siebert R, Krawczak M, Hampe J.

Hum Genet. 2011 Oct;130(4):505-16. doi: 10.1007/s00439-011-0971-3. Epub 2011 Feb 23.

PMID:
21344269
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