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Results: 1 to 20 of 103

1.

Mixed sequence reader: a program for analyzing DNA sequences with heterozygous base calling.

Chang CT, Tsai CN, Tang CY, Chen CH, Lian JH, Hu CY, Tsai CL, Chao A, Lai CH, Wang TH, Lee YS.

ScientificWorldJournal. 2012;2012:365104. doi: 10.1100/2012/365104. Epub 2012 Jun 18.

PMID:
22778697
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

CpG PatternFinder: a Windows-based utility program for easy and rapid identification of the CpG methylation status of DNA.

Xu YH, Manoharan HT, Pitot HC.

Biotechniques. 2007 Sep;43(3):334, 336-40, 342.

PMID:
17907576
[PubMed - indexed for MEDLINE]
Free Article
3.

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2008 May 29;9:253. doi: 10.1186/1471-2105-9-253.

PMID:
18510760
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A universal algorithm for de novo decrypting of heterozygous indel sequences: a tool for personalized medicine.

Lam CW.

Clin Chim Acta. 2008 Mar;389(1-2):7-13. Epub 2007 Nov 23.

PMID:
18078814
[PubMed - indexed for MEDLINE]
5.

Decoding of superimposed traces produced by direct sequencing of heterozygous indels.

Dmitriev DA, Rakitov RA.

PLoS Comput Biol. 2008 Jul 25;4(7):e1000113. doi: 10.1371/journal.pcbi.1000113.

PMID:
18654614
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing.

Nickerson DA, Tobe VO, Taylor SL.

Nucleic Acids Res. 1997 Jul 15;25(14):2745-51.

PMID:
9207020
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

SeqDoC: rapid SNP and mutation detection by direct comparison of DNA sequence chromatograms.

Crowe ML.

BMC Bioinformatics. 2005 May 31;6:133.

PMID:
15927052
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

ShiftDetector: detection of shift mutations.

Seroussi E, Ron M, Kedra D.

Bioinformatics. 2002 Aug;18(8):1137-8.

PMID:
12176839
[PubMed - indexed for MEDLINE]
Free Article
9.
10.

STRait Razor: a length-based forensic STR allele-calling tool for use with second generation sequencing data.

Warshauer DH, Lin D, Hari K, Jain R, Davis C, Larue B, King JL, Budowle B.

Forensic Sci Int Genet. 2013 Jul;7(4):409-17. doi: 10.1016/j.fsigen.2013.04.005. Epub 2013 May 16.

PMID:
23768312
[PubMed - indexed for MEDLINE]
11.

Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

Quinlan AR, Stewart DA, Strömberg MP, Marth GT.

Nat Methods. 2008 Feb;5(2):179-81. doi: 10.1038/nmeth.1172. Epub 2008 Jan 13.

PMID:
18193056
[PubMed - indexed for MEDLINE]
12.

PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.

Chen K, McLellan MD, Ding L, Wendl MC, Kasai Y, Wilson RK, Mardis ER.

Genome Res. 2007 May;17(5):659-66. Epub 2007 Apr 6.

PMID:
17416743
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Efficient, automatic detection of heterozygous bases during large-scale DNA sequence screening.

Phelps RS, Chadwick RB, Conrad MP, Kronick MN, Kamb A.

Biotechniques. 1995 Dec;19(6):984-9.

PMID:
8747666
[PubMed - indexed for MEDLINE]
14.

Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.

Mrázek J, Xie S.

Bioinformatics. 2006 Dec 15;22(24):3099-100. Epub 2006 Nov 8.

PMID:
17095514
[PubMed - indexed for MEDLINE]
Free Article
15.

Base-calling algorithm with vocabulary (BCV) method for analyzing population sequencing chromatograms.

Fantin YS, Neverov AD, Favorov AV, Alvarez-Figueroa MV, Braslavskaya SI, Gordukova MA, Karandashova IV, Kuleshov KV, Myznikova AI, Polishchuk MS, Reshetov DA, Voiciehovskaya YA, Mironov AA, Chulanov VP.

PLoS One. 2013;8(1):e54835. doi: 10.1371/journal.pone.0054835. Epub 2013 Jan 28.

PMID:
23382983
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Indel seeds for homology search.

Mak D, Gelfand Y, Benson G.

Bioinformatics. 2006 Jul 15;22(14):e341-9.

PMID:
16873491
[PubMed - indexed for MEDLINE]
Free Article
17.

SNP-PHAGE--High throughput SNP discovery pipeline.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Oct 23;7:468.

PMID:
17059604
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

PMID:
19958502
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

PMID:
15655071
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

SAT, a flexible and optimized Web application for SSR marker development.

Dereeper A, Argout X, Billot C, Rami JF, Ruiz M.

BMC Bioinformatics. 2007 Nov 29;8:465.

PMID:
18047663
[PubMed - indexed for MEDLINE]
Free PMC Article

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