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Results: 1 to 20 of 123

Similar articles for PubMed (Select 22748104)

1.

Single nucleotide polymorphism discovery from wheat next-generation sequence data.

Lai K, Duran C, Berkman PJ, Lorenc MT, Stiller J, Manoli S, Hayden MJ, Forrest KL, Fleury D, Baumann U, Zander M, Mason AS, Batley J, Edwards D.

Plant Biotechnol J. 2012 Aug;10(6):743-9. doi: 10.1111/j.1467-7652.2012.00718.x. Epub 2012 Jul 3.

PMID:
22748104
2.

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence.

You FM, Huo N, Deal KR, Gu YQ, Luo MC, McGuire PE, Dvorak J, Anderson OD.

BMC Genomics. 2011 Jan 25;12:59. doi: 10.1186/1471-2164-12-59.

3.

Single nucleotide polymorphism discovery in barley using autoSNPdb.

Duran C, Appleby N, Vardy M, Imelfort M, Edwards D, Batley J.

Plant Biotechnol J. 2009 May;7(4):326-33. doi: 10.1111/j.1467-7652.2009.00407.x.

PMID:
19386041
4.

AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants.

Duran C, Appleby N, Clark T, Wood D, Imelfort M, Batley J, Edwards D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D951-3. doi: 10.1093/nar/gkn650. Epub 2008 Oct 14.

5.

Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach.

Poland JA, Brown PJ, Sorrells ME, Jannink JL.

PLoS One. 2012;7(2):e32253. doi: 10.1371/journal.pone.0032253. Epub 2012 Feb 28.

6.

Transcriptome analysis of Capsicum annuum varieties Mandarin and Blackcluster: assembly, annotation and molecular marker discovery.

Ahn YK, Tripathi S, Kim JH, Cho YI, Lee HE, Kim DS, Woo JG, Cho MC.

Gene. 2014 Jan 10;533(2):494-9. doi: 10.1016/j.gene.2013.09.095. Epub 2013 Oct 11.

PMID:
24125952
7.

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat.

Trick M, Adamski NM, Mugford SG, Jiang CC, Febrer M, Uauy C.

BMC Plant Biol. 2012 Jan 26;12:14. doi: 10.1186/1471-2229-12-14.

8.

Accessing complex crop genomes with next-generation sequencing.

Edwards D, Batley J, Snowdon RJ.

Theor Appl Genet. 2013 Jan;126(1):1-11. doi: 10.1007/s00122-012-1964-x. Epub 2012 Sep 5. Review.

PMID:
22948437
9.

High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.).

Trebbi D, Maccaferri M, de Heer P, Sørensen A, Giuliani S, Salvi S, Sanguineti MC, Massi A, van der Vossen EA, Tuberosa R.

Theor Appl Genet. 2011 Aug;123(4):555-69. doi: 10.1007/s00122-011-1607-7. Epub 2011 May 25.

PMID:
21611761
10.

Multiplex single nucleotide polymorphism (SNP)-based genotyping in allohexaploid wheat using padlock probes.

Edwards KJ, Reid AL, Coghill JA, Berry ST, Barker GL.

Plant Biotechnol J. 2009 May;7(4):375-90. doi: 10.1111/j.1467-7652.2009.00413.x.

PMID:
19379286
11.

Discovery of genome-wide DNA polymorphisms in a landrace cultivar of Japonica rice by whole-genome sequencing.

Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K.

Plant Cell Physiol. 2011 Feb;52(2):274-82. doi: 10.1093/pcp/pcr003. Epub 2011 Jan 21.

12.

Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.

Djari A, Esquerré D, Weiss B, Martins F, Meersseman C, Boussaha M, Klopp C, Rocha D.

BMC Genomics. 2013 May 7;14:307. doi: 10.1186/1471-2164-14-307.

13.

SNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (Clupea harengus).

Helyar SJ, Limborg MT, Bekkevold D, Babbucci M, van Houdt J, Maes GE, Bargelloni L, Nielsen RO, Taylor MI, Ogden R, Cariani A, Carvalho GR, Consortium F, Panitz F.

PLoS One. 2012;7(8):e42089. doi: 10.1371/journal.pone.0042089. Epub 2012 Aug 7.

14.

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey.

Kerstens HH, Crooijmans RP, Veenendaal A, Dibbits BW, Chin-A-Woeng TF, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Oct 16;10:479. doi: 10.1186/1471-2164-10-479.

15.

Targeted re-sequencing of the allohexaploid wheat exome.

Winfield MO, Wilkinson PA, Allen AM, Barker GL, Coghill JA, Burridge A, Hall A, Brenchley RC, D'Amore R, Hall N, Bevan MW, Richmond T, Gerhardt DJ, Jeddeloh JA, Edwards KJ.

Plant Biotechnol J. 2012 Aug;10(6):733-42. doi: 10.1111/j.1467-7652.2012.00713.x. Epub 2012 Jun 18.

PMID:
22703335
16.

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array.

Liu S, Zhou Z, Lu J, Sun F, Wang S, Liu H, Jiang Y, Kucuktas H, Kaltenboeck L, Peatman E, Liu Z.

BMC Genomics. 2011 Jan 21;12:53. doi: 10.1186/1471-2164-12-53.

17.

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.).

Allen AM, Barker GL, Berry ST, Coghill JA, Gwilliam R, Kirby S, Robinson P, Brenchley RC, D'Amore R, McKenzie N, Waite D, Hall A, Bevan M, Hall N, Edwards KJ.

Plant Biotechnol J. 2011 Dec;9(9):1086-99. doi: 10.1111/j.1467-7652.2011.00628.x. Epub 2011 Jun 1.

PMID:
21627760
18.

Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.).

Ravel C, Praud S, Murigneux A, Canaguier A, Sapet F, Samson D, Balfourier F, Dufour P, Chalhoub B, Brunel D, Beckert M, Charmet G.

Genome. 2006 Sep;49(9):1131-9.

PMID:
17110993
19.

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery.

You FM, Huo N, Gu YQ, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2009 Oct 13;10:331. doi: 10.1186/1471-2105-10-331.

20.

SNP discovery by transcriptome pyrosequencing.

Barbazuk WB, Schnable PS.

Methods Mol Biol. 2011;729:225-46. doi: 10.1007/978-1-61779-065-2_15.

PMID:
21365494
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