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Items: 1 to 20 of 303

1.

Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites.

Hogart A, Lichtenberg J, Ajay SS, Anderson S; NIH Intramural Sequencing Center, Margulies EH, Bodine DM.

Genome Res. 2012 Aug;22(8):1407-18. doi: 10.1101/gr.132878.111. Epub 2012 Jun 8.

2.

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias.

Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ.

Epigenetics. 2011 Jan;6(1):34-44. doi: 10.4161/epi.6.1.13313. Epub 2011 Jan 1.

PMID:
20818161
3.

Comprehensive methylome map of lineage commitment from haematopoietic progenitors.

Ji H, Ehrlich LI, Seita J, Murakami P, Doi A, Lindau P, Lee H, Aryee MJ, Irizarry RA, Kim K, Rossi DJ, Inlay MA, Serwold T, Karsunky H, Ho L, Daley GQ, Weissman IL, Feinberg AP.

Nature. 2010 Sep 16;467(7313):338-42. doi: 10.1038/nature09367. Epub 2010 Aug 15.

4.

DNA methylation of Runx1 regulatory regions correlates with transition from primitive to definitive hematopoietic potential in vitro and in vivo.

Webber BR, Iacovino M, Choi SH, Tolar J, Kyba M, Blazar BR.

Blood. 2013 Oct 24;122(17):2978-86. doi: 10.1182/blood-2013-03-489369. Epub 2013 Sep 12.

6.

GABP controls a critical transcription regulatory module that is essential for maintenance and differentiation of hematopoietic stem/progenitor cells.

Yu S, Cui K, Jothi R, Zhao DM, Jing X, Zhao K, Xue HH.

Blood. 2011 Feb 17;117(7):2166-78. doi: 10.1182/blood-2010-09-306563. Epub 2010 Dec 7.

7.

Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis.

Pimkin M, Kossenkov AV, Mishra T, Morrissey CS, Wu W, Keller CA, Blobel GA, Lee D, Beer MA, Hardison RC, Weiss MJ.

Genome Res. 2014 Dec;24(12):1932-44. doi: 10.1101/gr.164178.113. Epub 2014 Oct 15.

9.

Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs.

Luu PL, Schöler HR, Araúzo-Bravo MJ.

Genome Res. 2013 Dec;23(12):2013-29. doi: 10.1101/gr.155960.113. Epub 2013 Oct 22.

10.

Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.

Raiber EA, Beraldi D, Ficz G, Burgess HE, Branco MR, Murat P, Oxley D, Booth MJ, Reik W, Balasubramanian S.

Genome Biol. 2012 Aug 17;13(8):R69. doi: 10.1186/gb-2012-13-8-r69.

11.

Genome-wide DNA methylation analysis in precursor B-cells.

Almamun M, Levinson BT, Gater ST, Schnabel RD, Arthur GL, Davis JW, Taylor KH.

Epigenetics. 2014 Dec;9(12):1588-95. doi: 10.4161/15592294.2014.983379.

12.

Genome-wide conserved consensus transcription factor binding motifs are hyper-methylated.

Choy MK, Movassagh M, Goh HG, Bennett MR, Down TA, Foo RS.

BMC Genomics. 2010 Sep 27;11:519. doi: 10.1186/1471-2164-11-519.

13.

Activation of the early B-cell-specific mb-1 (Ig-alpha) gene by Pax-5 is dependent on an unmethylated Ets binding site.

Maier H, Colbert J, Fitzsimmons D, Clark DR, Hagman J.

Mol Cell Biol. 2003 Mar;23(6):1946-60.

14.

Undifferentiated hematopoietic cells are characterized by a genome-wide undermethylation dip around the transcription start site and a hierarchical epigenetic plasticity.

Chung YS, Kim HJ, Kim TM, Hong SH, Kwon KR, An S, Park JH, Lee S, Oh IH.

Blood. 2009 Dec 3;114(24):4968-78. doi: 10.1182/blood-2009-01-197780. Epub 2009 Sep 14.

15.

Global MYCN transcription factor binding analysis in neuroblastoma reveals association with distinct E-box motifs and regions of DNA hypermethylation.

Murphy DM, Buckley PG, Bryan K, Das S, Alcock L, Foley NH, Prenter S, Bray I, Watters KM, Higgins D, Stallings RL.

PLoS One. 2009 Dec 4;4(12):e8154. doi: 10.1371/journal.pone.0008154.

16.

Genome-wide analysis of DNA methylation in bovine placentas.

Su J, Wang Y, Xing X, Liu J, Zhang Y.

BMC Genomics. 2014 Jan 8;15:12. doi: 10.1186/1471-2164-15-12.

17.

General transcription factor binding at CpG islands in normal cells correlates with resistance to de novo DNA methylation in cancer cells.

Gebhard C, Benner C, Ehrich M, Schwarzfischer L, Schilling E, Klug M, Dietmaier W, Thiede C, Holler E, Andreesen R, Rehli M.

Cancer Res. 2010 Feb 15;70(4):1398-407. doi: 10.1158/0008-5472.CAN-09-3406. Epub 2010 Feb 9.

18.

Down-regulation of interferon regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region.

Ortmann CA, Burchert A, Hölzle K, Nitsche A, Wittig B, Neubauer A, Schmidt M.

Nucleic Acids Res. 2005 Dec 7;33(21):6895-905. Print 2005.

19.

Epigenetic regulation of CD133/PROM1 expression in glioma stem cells by Sp1/myc and promoter methylation.

Gopisetty G, Xu J, Sampath D, Colman H, Puduvalli VK.

Oncogene. 2013 Jun 27;32(26):3119-29. doi: 10.1038/onc.2012.331. Epub 2012 Sep 3.

20.

Preferential binding of the methyl-CpG binding domain protein 2 at methylated transcriptional start site regions.

Chatagnon A, Perriaud L, Nazaret N, Croze S, Benhattar J, Lachuer J, Dante R.

Epigenetics. 2011 Nov;6(11):1295-307. doi: 10.4161/epi.6.11.17875. Epub 2011 Nov 1.

PMID:
22048253
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