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Items: 1 to 20 of 104


Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts.

Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R.

Genome Res. 2012 Oct;22(10):1974-84. doi: 10.1101/gr.138198.112. Epub 2012 Jun 4.


Host-symbiont co-speciation and reductive genome evolution in gut symbiotic bacteria of acanthosomatid stinkbugs.

Kikuchi Y, Hosokawa T, Nikoh N, Meng XY, Kamagata Y, Fukatsu T.

BMC Biol. 2009 Jan 15;7:2. doi: 10.1186/1741-7007-7-2.


Functional diversity within the simple gut microbiota of the honey bee.

Engel P, Martinson VG, Moran NA.

Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):11002-7. doi: 10.1073/pnas.1202970109. Epub 2012 Jun 18.


Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla.

Mahowald MA, Rey FE, Seedorf H, Turnbaugh PJ, Fulton RS, Wollam A, Shah N, Wang C, Magrini V, Wilson RK, Cantarel BL, Coutinho PM, Henrissat B, Crock LW, Russell A, Verberkmoes NC, Hettich RL, Gordon JI.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5859-64. doi: 10.1073/pnas.0901529106. Epub 2009 Mar 24.


Intestinal colonization: how key microbial players become established in this dynamic process: microbial metabolic activities and the interplay between the host and microbes.

El Aidy S, Van den Abbeele P, Van de Wiele T, Louis P, Kleerebezem M.

Bioessays. 2013 Oct;35(10):913-23. doi: 10.1002/bies.201300073. Epub 2013 Aug 15. Review.


PCR DGGE and RT-PCR DGGE show diversity and short-term temporal stability in the Clostridium coccoides-Eubacterium rectale group in the human intestinal microbiota.

Maukonen J, Mättö J, Satokari R, Söderlund H, Mattila-Sandholm T, Saarela M.

FEMS Microbiol Ecol. 2006 Dec;58(3):517-28.


Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome.

Jones BV, Sun F, Marchesi JR.

BMC Genomics. 2010 Jan 19;11:46. doi: 10.1186/1471-2164-11-46.


Characterization and detection of a widely distributed gene cluster that predicts anaerobic choline utilization by human gut bacteria.

Martínez-del Campo A, Bodea S, Hamer HA, Marks JA, Haiser HJ, Turnbaugh PJ, Balskus EP.

MBio. 2015 Apr 14;6(2). pii: e00042-15. doi: 10.1128/mBio.00042-15.


Evidence for cascades of perturbation and adaptation in the metabolic genes of higher termite gut symbionts.

Zhang X, Leadbetter JR.

MBio. 2012 Aug 21;3(4). pii: e00223-12. doi: 10.1128/mBio.00223-12. Print 2012.


Comparative genomic analysis of the microbiome [corrected] of herbivorous insects reveals eco-environmental adaptations: biotechnology applications.

Shi W, Xie S, Chen X, Sun S, Zhou X, Liu L, Gao P, Kyrpides NC, No EG, Yuan JS.

PLoS Genet. 2013;9(1):e1003131. doi: 10.1371/journal.pgen.1003131. Epub 2013 Jan 10. Erratum in: PLoS Genet. 2013 Feb;9(2). doi: 10.1371/annotation/91a25db3-8127-42c7-baa0-ce398a2857a6.


Understanding the interactions between bacteria in the human gut through metabolic modeling.

Shoaie S, Karlsson F, Mardinoglu A, Nookaew I, Bordel S, Nielsen J.

Sci Rep. 2013;3:2532. doi: 10.1038/srep02532.


A metagenome-wide association study of gut microbiota in type 2 diabetes.

Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, Liang S, Zhang W, Guan Y, Shen D, Peng Y, Zhang D, Jie Z, Wu W, Qin Y, Xue W, Li J, Han L, Lu D, Wu P, Dai Y, Sun X, Li Z, Tang A, Zhong S, Li X, Chen W, Xu R, Wang M, Feng Q, Gong M, Yu J, Zhang Y, Zhang M, Hansen T, Sanchez G, Raes J, Falony G, Okuda S, Almeida M, LeChatelier E, Renault P, Pons N, Batto JM, Zhang Z, Chen H, Yang R, Zheng W, Li S, Yang H, Wang J, Ehrlich SD, Nielsen R, Pedersen O, Kristiansen K, Wang J.

Nature. 2012 Oct 4;490(7418):55-60. doi: 10.1038/nature11450. Epub 2012 Sep 26.


Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans.

Neville BA, Sheridan PO, Harris HM, Coughlan S, Flint HJ, Duncan SH, Jeffery IB, Claesson MJ, Ross RP, Scott KP, O'Toole PW.

PLoS One. 2013 Jul 23;8(7):e68919. doi: 10.1371/journal.pone.0068919. Print 2013.


Bacterial colonization factors control specificity and stability of the gut microbiota.

Lee SM, Donaldson GP, Mikulski Z, Boyajian S, Ley K, Mazmanian SK.

Nature. 2013 Sep 19;501(7467):426-9. doi: 10.1038/nature12447. Epub 2013 Aug 18.


The chemical interactome space between the human host and the genetically defined gut metabotypes.

Jacobsen UP, Nielsen HB, Hildebrand F, Raes J, Sicheritz-Ponten T, Kouskoumvekaki I, Panagiotou G.

ISME J. 2013 Apr;7(4):730-42. doi: 10.1038/ismej.2012.141. Epub 2012 Nov 22.


Immunoregulation by the gut microbiota.

Nishio J, Honda K.

Cell Mol Life Sci. 2012 Nov;69(21):3635-50. doi: 10.1007/s00018-012-0993-6. Epub 2012 Apr 22. Review.


Postprandial remodeling of the gut microbiota in Burmese pythons.

Costello EK, Gordon JI, Secor SM, Knight R.

ISME J. 2010 Nov;4(11):1375-85. doi: 10.1038/ismej.2010.71. Epub 2010 Jun 3.


The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment.

Sczesnak A, Segata N, Qin X, Gevers D, Petrosino JF, Huttenhower C, Littman DR, Ivanov II.

Cell Host Microbe. 2011 Sep 15;10(3):260-72. doi: 10.1016/j.chom.2011.08.005.


Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis.

Thomas T, Rusch D, DeMaere MZ, Yung PY, Lewis M, Halpern A, Heidelberg KB, Egan S, Steinberg PD, Kjelleberg S.

ISME J. 2010 Dec;4(12):1557-67. doi: 10.1038/ismej.2010.74. Epub 2010 Jun 3.

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