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Items: 1 to 20 of 114

1.

Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.

Meyer KD, Saletore Y, Zumbo P, Elemento O, Mason CE, Jaffrey SR.

Cell. 2012 Jun 22;149(7):1635-46. doi: 10.1016/j.cell.2012.05.003. Epub 2012 May 17.

2.

FTO, RNA epigenetics and epilepsy.

Rowles J, Wong M, Powers R, Olsen M.

Epigenetics. 2012 Oct;7(10):1094-7. doi: 10.4161/epi.21977. Epub 2012 Sep 4.

3.
4.

Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing.

Dominissini D, Moshitch-Moshkovitz S, Salmon-Divon M, Amariglio N, Rechavi G.

Nat Protoc. 2013 Jan;8(1):176-89. doi: 10.1038/nprot.2012.148. Epub 2013 Jan 3.

PMID:
23288318
5.

Unique features of the m6A methylome in Arabidopsis thaliana.

Luo GZ, MacQueen A, Zheng G, Duan H, Dore LC, Lu Z, Liu J, Chen K, Jia G, Bergelson J, He C.

Nat Commun. 2014 Nov 28;5:5630. doi: 10.1038/ncomms6630.

6.

N6-methyl-adenosine modification in messenger and long non-coding RNA.

Pan T.

Trends Biochem Sci. 2013 Apr;38(4):204-9. doi: 10.1016/j.tibs.2012.12.006. Epub 2013 Jan 19. Review.

7.

A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation.

Ke S, Alemu EA, Mertens C, Gantman EC, Fak JJ, Mele A, Haripal B, Zucker-Scharff I, Moore MJ, Park CY, Vågbø CB, Kusśnierczyk A, Klungland A, Darnell JE Jr, Darnell RB.

Genes Dev. 2015 Oct 1;29(19):2037-53. doi: 10.1101/gad.269415.115. Epub 2015 Sep 24.

8.

MeT-DB: a database of transcriptome methylation in mammalian cells.

Liu H, Flores MA, Meng J, Zhang L, Zhao X, Rao MK, Chen Y, Huang Y.

Nucleic Acids Res. 2015 Jan;43(Database issue):D197-203. doi: 10.1093/nar/gku1024. Epub 2014 Nov 6.

9.

N6-methyl-adenosine (m6A) in RNA: an old modification with a novel epigenetic function.

Niu Y, Zhao X, Wu YS, Li MM, Wang XJ, Yang YG.

Genomics Proteomics Bioinformatics. 2013 Feb;11(1):8-17. doi: 10.1016/j.gpb.2012.12.002. Epub 2012 Dec 21. Review.

10.

Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome.

Li X, Xiong X, Wang K, Wang L, Shu X, Ma S, Yi C.

Nat Chem Biol. 2016 May;12(5):311-6. doi: 10.1038/nchembio.2040. Epub 2016 Feb 10.

PMID:
26863410
11.

The dynamic epitranscriptome: N6-methyladenosine and gene expression control.

Meyer KD, Jaffrey SR.

Nat Rev Mol Cell Biol. 2014 May;15(5):313-26. doi: 10.1038/nrm3785. Epub 2014 Apr 9. Review.

12.

A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.

Meng J, Lu Z, Liu H, Zhang L, Zhang S, Chen Y, Rao MK, Huang Y.

Methods. 2014 Oct 1;69(3):274-81. doi: 10.1016/j.ymeth.2014.06.008. Epub 2014 Jun 27.

13.

Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals.

Shabalina SA, Ogurtsov AY, Rogozin IB, Koonin EV, Lipman DJ.

Nucleic Acids Res. 2004 Mar 18;32(5):1774-82. Print 2004.

14.

Transcriptome-wide high-throughput deep m(6)A-seq reveals unique differential m(6)A methylation patterns between three organs in Arabidopsis thaliana.

Wan Y, Tang K, Zhang D, Xie S, Zhu X, Wang Z, Lang Z.

Genome Biol. 2015 Dec 14;16:272. doi: 10.1186/s13059-015-0839-2.

15.

Mapping and significance of the mRNA methylome.

Sibbritt T, Patel HR, Preiss T.

Wiley Interdiscip Rev RNA. 2013 Jul-Aug;4(4):397-422. doi: 10.1002/wrna.1166. Epub 2013 May 16. Review.

16.

Reversible RNA adenosine methylation in biological regulation.

Jia G, Fu Y, He C.

Trends Genet. 2013 Feb;29(2):108-15. doi: 10.1016/j.tig.2012.11.003. Epub 2012 Dec 4. Review.

17.

RNA N6-methyladenosine methylation in post-transcriptional gene expression regulation.

Yue Y, Liu J, He C.

Genes Dev. 2015 Jul 1;29(13):1343-55. doi: 10.1101/gad.262766.115. Review.

18.

An mRNA surveillance mechanism that eliminates transcripts lacking termination codons.

Frischmeyer PA, van Hoof A, O'Donnell K, Guerrerio AL, Parker R, Dietz HC.

Science. 2002 Mar 22;295(5563):2258-61.

19.

Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome.

Li X, Zhu P, Ma S, Song J, Bai J, Sun F, Yi C.

Nat Chem Biol. 2015 Aug;11(8):592-7. doi: 10.1038/nchembio.1836. Epub 2015 Jun 15.

PMID:
26075521
20.

Analysis of SAGE data in human platelets: features of the transcriptome in an anucleate cell.

Dittrich M, Birschmann I, Pfrang J, Herterich S, Smolenski A, Walter U, Dandekar T.

Thromb Haemost. 2006 Apr;95(4):643-51.

PMID:
16601835
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