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Global analysis reveals multiple pathways for unique regulation of mRNA decay in induced pluripotent stem cells.

Neff AT, Lee JY, Wilusz J, Tian B, Wilusz CJ.

Genome Res. 2012 Aug;22(8):1457-67. doi: 10.1101/gr.134312.111. Epub 2012 Apr 25.


Synergetic cooperation of microRNAs with transcription factors in iPS cell generation.

Chen J, Wang G, Lu C, Guo X, Hong W, Kang J, Wang J.

PLoS One. 2012;7(7):e40849. doi: 10.1371/journal.pone.0040849. Epub 2012 Jul 13.


Systematic analysis of cis-elements in unstable mRNAs demonstrates that CUGBP1 is a key regulator of mRNA decay in muscle cells.

Lee JE, Lee JY, Wilusz J, Tian B, Wilusz CJ.

PLoS One. 2010 Jun 21;5(6):e11201. doi: 10.1371/journal.pone.0011201.


Embryonic stem cell microRNAs: defining factors in induced pluripotent (iPS) and cancer (CSC) stem cells?

Gunaratne PH.

Curr Stem Cell Res Ther. 2009 Sep;4(3):168-77. Review.


MicroRNA-323-3p regulates the activity of polycomb repressive complex 2 (PRC2) via targeting the mRNA of embryonic ectoderm development (Eed) gene in mouse embryonic stem cells.

Zhang Y, Teng F, Luo GZ, Wang M, Tong M, Zhao X, Wang L, Wang XJ, Zhou Q.

J Biol Chem. 2013 Aug 16;288(33):23659-65. doi: 10.1074/jbc.M113.475608. Epub 2013 Jul 2.


Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells.

Sharova LV, Sharov AA, Nedorezov T, Piao Y, Shaik N, Ko MS.

DNA Res. 2009 Feb;16(1):45-58. doi: 10.1093/dnares/dsn030. Epub 2008 Nov 11.


RNA-based regulation of pluripotency.

Wright JE, Ciosk R.

Trends Genet. 2013 Feb;29(2):99-107. doi: 10.1016/j.tig.2012.10.007. Epub 2012 Nov 10. Review.


Functional recapitulation of smooth muscle cells via induced pluripotent stem cells from human aortic smooth muscle cells.

Lee TH, Song SH, Kim KL, Yi JY, Shin GH, Kim JY, Kim J, Han YM, Lee SH, Lee SH, Shim SH, Suh W.

Circ Res. 2010 Jan 8;106(1):120-8. doi: 10.1161/CIRCRESAHA.109.207902. Epub 2009 Dec 3.


HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency.

Santoni FA, Guerra J, Luban J.

Retrovirology. 2012 Dec 20;9:111. doi: 10.1186/1742-4690-9-111.


The 3'-untranslated region of p21WAF1 mRNA is a composite cis-acting sequence bound by RNA-binding proteins from breast cancer cells, including HuR and poly(C)-binding protein.

Giles KM, Daly JM, Beveridge DJ, Thomson AM, Voon DC, Furneaux HM, Jazayeri JA, Leedman PJ.

J Biol Chem. 2003 Jan 31;278(5):2937-46. Epub 2002 Nov 12.


Defining hypo-methylated regions of stem cell-specific promoters in human iPS cells derived from extra-embryonic amnions and lung fibroblasts.

Nishino K, Toyoda M, Yamazaki-Inoue M, Makino H, Fukawatase Y, Chikazawa E, Takahashi Y, Miyagawa Y, Okita H, Kiyokawa N, Akutsu H, Umezawa A.

PLoS One. 2010 Sep 27;5(9):e13017. doi: 10.1371/journal.pone.0013017.


Tbx3 improves the germ-line competency of induced pluripotent stem cells.

Han J, Yuan P, Yang H, Zhang J, Soh BS, Li P, Lim SL, Cao S, Tay J, Orlov YL, Lufkin T, Ng HH, Tam WL, Lim B.

Nature. 2010 Feb 25;463(7284):1096-100. doi: 10.1038/nature08735. Epub 2010 Feb 7.


n-Butylidenephthalide (BP) maintains stem cell pluripotency by activating Jak2/Stat3 pathway and increases the efficiency of iPS cells generation.

Liu SP, Harn HJ, Chien YJ, Chang CH, Hsu CY, Fu RH, Huang YC, Chen SY, Shyu WC, Lin SZ.

PLoS One. 2012;7(9):e44024. doi: 10.1371/journal.pone.0044024. Epub 2012 Sep 7.


The prolyl isomerase pin1 regulates mRNA levels of genes with short half-lives by targeting specific RNA binding proteins.

Krishnan N, Titus MA, Thapar R.

PLoS One. 2014 Jan 9;9(1):e85427. doi: 10.1371/journal.pone.0085427. eCollection 2014.


Multilineage-differentiating stress-enduring (Muse) cells are a primary source of induced pluripotent stem cells in human fibroblasts.

Wakao S, Kitada M, Kuroda Y, Shigemoto T, Matsuse D, Akashi H, Tanimura Y, Tsuchiyama K, Kikuchi T, Goda M, Nakahata T, Fujiyoshi Y, Dezawa M.

Proc Natl Acad Sci U S A. 2011 Jun 14;108(24):9875-80. doi: 10.1073/pnas.1100816108. Epub 2011 May 31.


Sodium butyrate promotes generation of human induced pluripotent stem cells through induction of the miR302/367 cluster.

Zhang Z, Wu WS.

Stem Cells Dev. 2013 Aug 15;22(16):2268-77. doi: 10.1089/scd.2012.0650. Epub 2013 Apr 27.


Target identification of microRNAs expressed highly in human embryonic stem cells.

Li SS, Yu SL, Kao LP, Tsai ZY, Singh S, Chen BZ, Ho BC, Liu YH, Yang PC.

J Cell Biochem. 2009 Apr 15;106(6):1020-30. doi: 10.1002/jcb.22084.


Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability.

Duttagupta R, Tian B, Wilusz CJ, Khounh DT, Soteropoulos P, Ouyang M, Dougherty JP, Peltz SW.

Mol Cell Biol. 2005 Jul;25(13):5499-513.


Adenoviral gene delivery can reprogram human fibroblasts to induced pluripotent stem cells.

Zhou W, Freed CR.

Stem Cells. 2009 Nov;27(11):2667-74. doi: 10.1002/stem.201.

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