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Results: 1 to 20 of 100

1.

HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature.

Kvon EZ, Stampfel G, Yáñez-Cuna JO, Dickson BJ, Stark A.

Genes Dev. 2012 May 1;26(9):908-13. doi: 10.1101/gad.188052.112. Epub 2012 Apr 12.

PMID:
22499593
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Molecular dissection of cis-regulatory modules at the Drosophila bithorax complex reveals critical transcription factor signature motifs.

Starr MO, Ho MC, Gunther EJ, Tu YK, Shur AS, Goetz SE, Borok MJ, Kang V, Drewell RA.

Dev Biol. 2011 Nov 15;359(2):290-302. doi: 10.1016/j.ydbio.2011.07.028. Epub 2011 Jul 28.

PMID:
21821017
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

HOT DNAs: a novel class of developmental enhancers.

Farley E, Levine M.

Genes Dev. 2012 May 1;26(9):873-6. doi: 10.1101/gad.192583.112.

PMID:
22549952
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Co-activation of microRNAs by Zelda is essential for early Drosophila development.

Fu S, Nien CY, Liang HL, Rushlow C.

Development. 2014 May;141(10):2108-18. doi: 10.1242/dev.108118. Epub 2014 Apr 24.

PMID:
24764079
[PubMed - indexed for MEDLINE]
Free Article
5.

Temporal coordination of gene networks by Zelda in the early Drosophila embryo.

Nien CY, Liang HL, Butcher S, Sun Y, Fu S, Gocha T, Kirov N, Manak JR, Rushlow C.

PLoS Genet. 2011 Oct;7(10):e1002339. doi: 10.1371/journal.pgen.1002339. Epub 2011 Oct 20.

PMID:
22028675
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition.

Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB.

PLoS Genet. 2011 Oct;7(10):e1002266. doi: 10.1371/journal.pgen.1002266. Epub 2011 Oct 20.

PMID:
22028662
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

One thousand and one ways of making functionally similar transcriptional enhancers.

Veitia RA.

Bioessays. 2008 Nov;30(11-12):1052-7. doi: 10.1002/bies.20849. Review.

PMID:
18937349
[PubMed - indexed for MEDLINE]
8.

The TAGteam motif facilitates binding of 21 sequence-specific transcription factors in the Drosophila embryo.

Satija R, Bradley RK.

Genome Res. 2012 Apr;22(4):656-65. doi: 10.1101/gr.130682.111. Epub 2012 Jan 13.

PMID:
22247430
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila.

Fisher WW, Li JJ, Hammonds AS, Brown JB, Pfeiffer BD, Weiszmann R, MacArthur S, Thomas S, Stamatoyannopoulos JA, Eisen MB, Bickel PJ, Biggin MD, Celniker SE.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21330-5. doi: 10.1073/pnas.1209589110. Epub 2012 Dec 10.

PMID:
23236164
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo.

Papatsenko D, Levine M.

Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):4966-71. Epub 2005 Mar 28.

PMID:
15795372
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Contribution of distinct homeodomain DNA binding specificities to Drosophila embryonic mesodermal cell-specific gene expression programs.

Busser BW, Gisselbrecht SS, Shokri L, Tansey TR, Gamble CE, Bulyk ML, Michelson AM.

PLoS One. 2013 Jul 26;8(7):e69385. doi: 10.1371/journal.pone.0069385. Print 2013.

PMID:
23922708
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Organization of developmental enhancers in the Drosophila embryo.

Papatsenko D, Goltsev Y, Levine M.

Nucleic Acids Res. 2009 Sep;37(17):5665-77. doi: 10.1093/nar/gkp619. Epub 2009 Aug 3.

PMID:
19651877
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design.

Martinez CA, Barr KA, Kim AR, Reinitz J.

Methods. 2013 Jul 15;62(1):91-8. doi: 10.1016/j.ymeth.2013.05.014. Epub 2013 Jun 1.

PMID:
23732772
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila.

Xu Z, Chen H, Ling J, Yu D, Struffi P, Small S.

Genes Dev. 2014 Mar 15;28(6):608-21. doi: 10.1101/gad.234534.113.

PMID:
24637116
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Conservation of enhancer location in divergent insects.

Cande J, Goltsev Y, Levine MS.

Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14414-9. doi: 10.1073/pnas.0905754106. Epub 2009 Aug 3.

PMID:
19666595
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.

Zeitlinger J, Zinzen RP, Stark A, Kellis M, Zhang H, Young RA, Levine M.

Genes Dev. 2007 Feb 15;21(4):385-90.

PMID:
17322397
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The function and regulation of Ultrabithorax in the legs of Drosophila melanogaster.

Davis GK, Srinivasan DG, Wittkopp PJ, Stern DL.

Dev Biol. 2007 Aug 15;308(2):621-31. Epub 2007 Jun 12.

PMID:
17640629
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.

Rajewsky N, Vergassola M, Gaul U, Siggia ED.

BMC Bioinformatics. 2002 Oct 24;3:30. Epub 2002 Oct 24.

PMID:
12398796
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo.

Perry MW, Boettiger AN, Levine M.

Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13570-5. doi: 10.1073/pnas.1109873108. Epub 2011 Aug 8.

PMID:
21825127
[PubMed - indexed for MEDLINE]
Free PMC Article

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