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Results: 1 to 20 of 136

1.

Systematic discovery of structural elements governing stability of mammalian messenger RNAs.

Goodarzi H, Najafabadi HS, Oikonomou P, Greco TM, Fish L, Salavati R, Cristea IM, Tavazoie S.

Nature. 2012 Apr 8;485(7397):264-8. doi: 10.1038/nature11013.

PMID:
22495308
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Metastasis-suppressor transcript destabilization through TARBP2 binding of mRNA hairpins.

Goodarzi H, Zhang S, Buss CG, Fish L, Tavazoie S, Tavazoie SF.

Nature. 2014 Sep 11;513(7517):256-60. doi: 10.1038/nature13466. Epub 2014 Jul 9.

PMID:
25043050
[PubMed - indexed for MEDLINE]
3.
4.

hnRNPA2/B1 and nELAV proteins bind to a specific U-rich element in CDK5R1 3'-UTR and oppositely regulate its expression.

Zuccotti P, Colombrita C, Moncini S, Barbieri A, Lunghi M, Gelfi C, De Palma S, Nicolin A, Ratti A, Venturin M, Riva P.

Biochim Biophys Acta. 2014 Jun;1839(6):506-16. doi: 10.1016/j.bbagrm.2014.04.018. Epub 2014 May 2.

PMID:
24792867
[PubMed - indexed for MEDLINE]
5.

Systematic identification of regulatory elements in conserved 3' UTRs of human transcripts.

Oikonomou P, Goodarzi H, Tavazoie S.

Cell Rep. 2014 Apr 10;7(1):281-92. doi: 10.1016/j.celrep.2014.03.001. Epub 2014 Mar 20.

PMID:
24656821
[PubMed - indexed for MEDLINE]
Free Article
6.

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes.

Parker BJ, Moltke I, Roth A, Washietl S, Wen J, Kellis M, Breaker R, Pedersen JS.

Genome Res. 2011 Nov;21(11):1929-43. doi: 10.1101/gr.112516.110. Epub 2011 Oct 12.

PMID:
21994249
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Post-transcriptional regulation of glucose transporter-1 by an AU-rich element in the 3'UTR and by hnRNP A2.

Griffin ME, Hamilton BJ, Roy KM, Du M, Willson AM, Keenan BJ, Wang XW, Nichols RC.

Biochem Biophys Res Commun. 2004 Jun 11;318(4):977-82.

PMID:
15147968
[PubMed - indexed for MEDLINE]
8.

Global identification of conserved post-transcriptional regulatory programs in trypanosomatids.

Najafabadi HS, Lu Z, MacPherson C, Mehta V, Adoue V, Pastinen T, Salavati R.

Nucleic Acids Res. 2013 Oct;41(18):8591-600. doi: 10.1093/nar/gkt647. Epub 2013 Jul 22.

PMID:
23877242
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Structural determinants of human ζ-globin mRNA stability.

He Z, Song D, van Zalen S, Russell JE.

J Hematol Oncol. 2014 Apr 21;7:35. doi: 10.1186/1756-8722-7-35.

PMID:
24751163
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding.

Marchand V, Méreau A, Jacquenet S, Thomas D, Mougin A, Gattoni R, Stévenin J, Branlant C.

J Mol Biol. 2002 Nov 1;323(4):629-52.

PMID:
12419255
[PubMed - indexed for MEDLINE]
11.

Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay.

McGlincy NJ, Tan LY, Paul N, Zavolan M, Lilley KS, Smith CW.

BMC Genomics. 2010 Oct 14;11:565. doi: 10.1186/1471-2164-11-565.

PMID:
20946641
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The 3'-untranslated region of p21WAF1 mRNA is a composite cis-acting sequence bound by RNA-binding proteins from breast cancer cells, including HuR and poly(C)-binding protein.

Giles KM, Daly JM, Beveridge DJ, Thomson AM, Voon DC, Furneaux HM, Jazayeri JA, Leedman PJ.

J Biol Chem. 2003 Jan 31;278(5):2937-46. Epub 2002 Nov 12.

PMID:
12431987
[PubMed - indexed for MEDLINE]
Free Article
13.

Comparative analysis of mRNA isoform expression in cardiac hypertrophy and development reveals multiple post-transcriptional regulatory modules.

Park JY, Li W, Zheng D, Zhai P, Zhao Y, Matsuda T, Vatner SF, Sadoshima J, Tian B.

PLoS One. 2011;6(7):e22391. doi: 10.1371/journal.pone.0022391. Epub 2011 Jul 22.

PMID:
21799842
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes.

Rabani M, Kertesz M, Segal E.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14885-90. doi: 10.1073/pnas.0803169105. Epub 2008 Sep 24.

PMID:
18815376
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing.

Sathirapongsasuti JF, Sathira N, Suzuki Y, Huttenhower C, Sugano S.

Nucleic Acids Res. 2011 Mar;39(6):1967-79. doi: 10.1093/nar/gkq949. Epub 2010 Nov 9.

PMID:
21062826
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

AU-rich elements and alternative splicing in the beta-catenin 3'UTR can influence the human beta-catenin mRNA stability.

Thiele A, Nagamine Y, Hauschildt S, Clevers H.

Exp Cell Res. 2006 Jul 15;312(12):2367-78. Epub 2006 Apr 15.

PMID:
16696969
[PubMed - indexed for MEDLINE]
17.

The HILDA complex coordinates a conditional switch in the 3'-untranslated region of the VEGFA mRNA.

Yao P, Potdar AA, Ray PS, Eswarappa SM, Flagg AC, Willard B, Fox PL.

PLoS Biol. 2013;11(8):e1001635. doi: 10.1371/journal.pbio.1001635. Epub 2013 Aug 20.

PMID:
23976881
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Analysis of RNA-protein interactions of mouse liver cytochrome P4502A5 mRNA.

Tilloy-Ellul A, Raffalli-Mathieu F, Lang MA.

Biochem J. 1999 May 1;339 ( Pt 3):695-703.

PMID:
10215609
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L.

Rossbach O, Hung LH, Khrameeva E, Schreiner S, König J, Curk T, Zupan B, Ule J, Gelfand MS, Bindereif A.

RNA Biol. 2014 Feb;11(2):146-55. doi: 10.4161/rna.27991. Epub 2014 Feb 7.

PMID:
24526010
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes.

Chen XS, Brown CM.

Nucleic Acids Res. 2012 Oct;40(18):8862-73. doi: 10.1093/nar/gks684. Epub 2012 Jul 20.

PMID:
22821558
[PubMed - indexed for MEDLINE]
Free PMC Article
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