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Items: 1 to 20 of 463

1.

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain.

Hughes ME, Grant GR, Paquin C, Qian J, Nitabach MN.

Genome Res. 2012 Jul;22(7):1266-81. doi: 10.1101/gr.128876.111. Epub 2012 Apr 3.

2.

A methyl transferase links the circadian clock to the regulation of alternative splicing.

Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG, Brown JW, Cerdán PD, Borevitz JO, Mas P, Ceriani MF, Kornblihtt AR, Yanovsky MJ.

Nature. 2010 Nov 4;468(7320):112-6. doi: 10.1038/nature09470. Epub 2010 Oct 20.

PMID:
20962777
3.

The Drosophila melanogaster transcriptome by paired-end RNA sequencing.

Daines B, Wang H, Wang L, Li Y, Han Y, Emmert D, Gelbart W, Wang X, Li W, Gibbs R, Chen R.

Genome Res. 2011 Feb;21(2):315-24. doi: 10.1101/gr.107854.110. Epub 2010 Dec 22.

4.

A self-sustaining, light-entrainable circadian oscillator in the Drosophila brain.

Veleri S, Brandes C, Helfrich-Förster C, Hall JC, Stanewsky R.

Curr Biol. 2003 Oct 14;13(20):1758-67.

5.

The developmental transcriptome of Drosophila melanogaster.

Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE.

Nature. 2011 Mar 24;471(7339):473-9. doi: 10.1038/nature09715. Epub 2010 Dec 22.

6.
7.

Micro-managing the circadian clock: The role of microRNAs in biological timekeeping.

Mehta N, Cheng HY.

J Mol Biol. 2013 Oct 9;425(19):3609-24. doi: 10.1016/j.jmb.2012.10.022. Epub 2012 Nov 6. Review.

PMID:
23142644
8.

Integration of light and temperature in the regulation of circadian gene expression in Drosophila.

Boothroyd CE, Wijnen H, Naef F, Saez L, Young MW.

PLoS Genet. 2007 Apr 6;3(4):e54.

9.
10.

Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data.

Jung CH, Hansen MA, Makunin IV, Korbie DJ, Mattick JS.

BMC Genomics. 2010 Feb 1;11:77. doi: 10.1186/1471-2164-11-77.

11.

RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum.

Zhao C, Waalwijk C, de Wit PJ, Tang D, van der Lee T.

BMC Genomics. 2013 Jan 16;14:21. doi: 10.1186/1471-2164-14-21.

12.
13.

Comparative analysis of human protein-coding and noncoding RNAs between brain and 10 mixed cell lines by RNA-Seq.

Chen G, Yin K, Shi L, Fang Y, Qi Y, Li P, Luo J, He B, Liu M, Shi T.

PLoS One. 2011;6(11):e28318. doi: 10.1371/journal.pone.0028318. Epub 2011 Nov 30.

14.

Distinct roles of DBHS family members in the circadian transcriptional feedback loop.

Kowalska E, Ripperger JA, Muheim C, Maier B, Kurihara Y, Fox AH, Kramer A, Brown SA.

Mol Cell Biol. 2012 Nov;32(22):4585-94. doi: 10.1128/MCB.00334-12. Epub 2012 Sep 10.

15.

Drosophila free-running rhythms require intercellular communication.

Peng Y, Stoleru D, Levine JD, Hall JC, Rosbash M.

PLoS Biol. 2003 Oct;1(1):E13. Epub 2003 Sep 15.

16.

A new gene encoding a putative transcription factor regulated by the Drosophila circadian clock.

Rouyer F, Rachidi M, Pikielny C, Rosbash M.

EMBO J. 1997 Jul 1;16(13):3944-54.

17.

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

Rose D, Hiller M, Schutt K, Hackermüller J, Backofen R, Stadler PF.

Bioinformatics. 2011 Jul 15;27(14):1894-900. doi: 10.1093/bioinformatics/btr314. Epub 2011 May 26.

18.

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, Clough E, Dasgupta A, Gubbala S, Han Y, Jayaseelan JC, Kalra D, Kim YA, Kovar CL, Lee SL, Li M, Malley JD, Malone JH, Mathew T, Mattiuzzo NR, Munidasa M, Muzny DM, Ongeri F, Perales L, Przytycka TM, Pu LL, Robinson G, Thornton RL, Saada N, Scherer SE, Smith HE, Vinson C, Warner CB, Worley KC, Wu YQ, Zou X, Cherbas P, Kellis M, Eisen MB, Piano F, Kionte K, Fitch DH, Sternberg PW, Cutter AD, Duff MO, Hoskins RA, Graveley BR, Gibbs RA, Bickel PJ, Kopp A, Carninci P, Celniker SE, Oliver B, Richards S.

Genome Res. 2014 Jul;24(7):1209-23. doi: 10.1101/gr.159384.113.

19.

Suppression of PERIOD protein abundance and circadian cycling by the Drosophila clock mutation timeless.

Price JL, Dembinska ME, Young MW, Rosbash M.

EMBO J. 1995 Aug 15;14(16):4044-9.

20.

Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing.

Liang S, Wang B, Pan L, Ye Y, He M, Han S, Zheng S, Wang X, Lin Y.

BMC Genomics. 2012 Dec 31;13:738. doi: 10.1186/1471-2164-13-738.

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