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Items: 1 to 20 of 465

1.

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk.

Brinkman AB, Gu H, Bartels SJ, Zhang Y, Matarese F, Simmer F, Marks H, Bock C, Gnirke A, Meissner A, Stunnenberg HG.

Genome Res. 2012 Jun;22(6):1128-38. doi: 10.1101/gr.133728.111. Epub 2012 Mar 30.

2.

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.

Statham AL, Robinson MD, Song JZ, Coolen MW, Stirzaker C, Clark SJ.

Genome Res. 2012 Jun;22(6):1120-7. doi: 10.1101/gr.132076.111. Epub 2012 Mar 30.

3.

Genome-wide epigenetic analysis of human pluripotent stem cells by ChIP and ChIP-Seq.

Hitchler MJ, Rice JC.

Methods Mol Biol. 2011;767:253-67. doi: 10.1007/978-1-61779-201-4_19.

PMID:
21822881
4.

H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome.

Pauler FM, Sloane MA, Huang R, Regha K, Koerner MV, Tamir I, Sommer A, Aszodi A, Jenuwein T, Barlow DP.

Genome Res. 2009 Feb;19(2):221-33. doi: 10.1101/gr.080861.108. Epub 2008 Dec 1.

5.

Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos.

Lindeman LC, Winata CL, Aanes H, Mathavan S, Alestrom P, Collas P.

Int J Dev Biol. 2010;54(5):803-13. doi: 10.1387/ijdb.103081ll.

6.

Genome-wide analysis of histone H3 lysine 27 trimethylation by ChIP-chip in gastric cancer patients.

Zhang L, Zhong K, Dai Y, Zhou H.

J Gastroenterol. 2009;44(4):305-12. doi: 10.1007/s00535-009-0027-9. Epub 2009 Mar 10.

PMID:
19267258
7.

The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands.

Takeshima H, Yamashita S, Shimazu T, Niwa T, Ushijima T.

Genome Res. 2009 Nov;19(11):1974-82. doi: 10.1101/gr.093310.109. Epub 2009 Aug 3.

8.

Epigenetic modifications and mRNA levels of the imprinted gene Grb10 in serially passaged fibroblast cells.

Yao J, Huang Y, Huang R, Shi R, Chen P, Zhu B, Li M, Jiang X, Zheng M, Jiang Y, Yang X.

Biochimie. 2012 Dec;94(12):2699-705. doi: 10.1016/j.biochi.2012.08.009. Epub 2012 Aug 21.

PMID:
22971350
9.

Coordinate regulation of DNA methylation and H3K27me3 in mouse embryonic stem cells.

Hagarman JA, Motley MP, Kristjansdottir K, Soloway PD.

PLoS One. 2013;8(1):e53880. doi: 10.1371/journal.pone.0053880. Epub 2013 Jan 11.

10.

Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells.

Gao F, Ji G, Gao Z, Han X, Ye M, Yuan Z, Luo H, Huang X, Natarajan K, Wang J, Yang H, Zhang X.

Genomics. 2014 Feb-Mar;103(2-3):204-10. doi: 10.1016/j.ygeno.2013.12.006. Epub 2014 Jan 7.

11.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF.

Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19.

12.

Genome-wide bovine H3K27me3 modifications and the regulatory effects on genes expressions in peripheral blood lymphocytes.

He Y, Yu Y, Zhang Y, Song J, Mitra A, Zhang Y, Wang Y, Sun D, Zhang S.

PLoS One. 2012;7(6):e39094. doi: 10.1371/journal.pone.0039094. Epub 2012 Jun 28.

13.

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.

Rye M, Sætrom P, Håndstad T, Drabløs F.

BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80.

14.
15.

Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions.

Dindot SV, Person R, Strivens M, Garcia R, Beaudet AL.

Genome Res. 2009 Aug;19(8):1374-83. doi: 10.1101/gr.089185.108. Epub 2009 Jun 19.

16.

Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing.

Wu J, Wang SH, Potter D, Liu JC, Smith LT, Wu YZ, Huang TH, Plass C.

BMC Genomics. 2007 May 24;8:131.

17.

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.

Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, Koseki H, Bernstein BE.

PLoS Genet. 2008 Oct;4(10):e1000242. doi: 10.1371/journal.pgen.1000242. Epub 2008 Oct 31.

19.

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity.

Young MD, Willson TA, Wakefield MJ, Trounson E, Hilton DJ, Blewitt ME, Oshlack A, Majewski IJ.

Nucleic Acids Res. 2011 Sep 1;39(17):7415-27. doi: 10.1093/nar/gkr416. Epub 2011 Jun 7.

20.

PcG proteins, DNA methylation, and gene repression by chromatin looping.

Tiwari VK, McGarvey KM, Licchesi JD, Ohm JE, Herman JG, Schübeler D, Baylin SB.

PLoS Biol. 2008 Dec 2;6(12):2911-27. doi: 10.1371/journal.pbio.0060306.

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