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Results: 1 to 20 of 106

1.

TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex.

Shabbeer A, Cowan LS, Ozcaglar C, Rastogi N, Vandenberg SL, Yener B, Bennett KP.

Infect Genet Evol. 2012 Jun;12(4):789-97. doi: 10.1016/j.meegid.2012.02.010. Epub 2012 Mar 3.

PMID:
22406225
[PubMed - indexed for MEDLINE]
2.

A conformal Bayesian network for classification of Mycobacterium tuberculosis complex lineages.

Aminian M, Shabbeer A, Bennett KP.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S4. doi: 10.1186/1471-2105-11-S3-S4.

PMID:
20438651
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Online tools for polyphasic analysis of Mycobacterium tuberculosis complex genotyping data: now and next.

Weniger T, Krawczyk J, Supply P, Harmsen D, Niemann S.

Infect Genet Evol. 2012 Jun;12(4):748-54. doi: 10.1016/j.meegid.2012.01.021. Epub 2012 Feb 10.

PMID:
22342955
[PubMed - indexed for MEDLINE]
4.

SITVITWEB--a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology.

Demay C, Liens B, Burguière T, Hill V, Couvin D, Millet J, Mokrousov I, Sola C, Zozio T, Rastogi N.

Infect Genet Evol. 2012 Jun;12(4):755-66. doi: 10.1016/j.meegid.2012.02.004. Epub 2012 Feb 17.

PMID:
22365971
[PubMed - indexed for MEDLINE]
5.

The forest behind the tree: phylogenetic exploration of a dominant Mycobacterium tuberculosis strain lineage from a high tuberculosis burden country.

Cardoso Oelemann M, Gomes HM, Willery E, Possuelo L, Batista Lima KV, Allix-Béguec C, Locht C, Goguet de la Salmonière YO, Gutierrez MC, Suffys P, Supply P.

PLoS One. 2011 Mar 25;6(3):e18256. doi: 10.1371/journal.pone.0018256.

PMID:
21464915
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Diversity of Mycobacterium tuberculosis genotypes circulating in Ndola, Zambia.

Mulenga C, Shamputa IC, Mwakazanga D, Kapata N, Portaels F, Rigouts L.

BMC Infect Dis. 2010 Jun 17;10:177. doi: 10.1186/1471-2334-10-177.

PMID:
20565802
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates.

Allix-Béguec C, Harmsen D, Weniger T, Supply P, Niemann S.

J Clin Microbiol. 2008 Aug;46(8):2692-9. doi: 10.1128/JCM.00540-08. Epub 2008 Jun 11.

PMID:
18550737
[PubMed - indexed for MEDLINE]
Free PMC Article
8.
9.

MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria.

Weniger T, Krawczyk J, Supply P, Niemann S, Harmsen D.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W326-31. doi: 10.1093/nar/gkq351. Epub 2010 May 10.

PMID:
20457747
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genotyping of the Mycobacterium tuberculosis complex using MIRUs: association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics.

Sola C, Filliol I, Legrand E, Lesjean S, Locht C, Supply P, Rastogi N.

Infect Genet Evol. 2003 Jul;3(2):125-33.

PMID:
12809807
[PubMed - indexed for MEDLINE]
11.

MLVA based classification of Mycobacterium tuberculosis complex lineages for a robust phylogeographic snapshot of its worldwide molecular diversity.

Hill V, Zozio T, Sadikalay S, Viegas S, Streit E, Kallenius G, Rastogi N.

PLoS One. 2012;7(9):e41991. doi: 10.1371/journal.pone.0041991. Epub 2012 Sep 11.

PMID:
22984400
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Mycobacterium tuberculosis spoligotypes that may derive from mixed strain infections are revealed by a novel computational approach.

Lazzarini LC, Rosenfeld J, Huard RC, Hill V, Lapa e Silva JR, DeSalle R, Rastogi N, Ho JL.

Infect Genet Evol. 2012 Jun;12(4):798-806. doi: 10.1016/j.meegid.2011.08.028. Epub 2011 Sep 5.

PMID:
21920466
[PubMed - indexed for MEDLINE]
13.

Web tools for molecular epidemiology of tuberculosis.

Shabbeer A, Ozcaglar C, Yener B, Bennett KP.

Infect Genet Evol. 2012 Jun;12(4):767-81. doi: 10.1016/j.meegid.2011.08.019. Epub 2011 Aug 28.

PMID:
21903179
[PubMed - indexed for MEDLINE]
14.

Mycobacterium tuberculosis ecology in Venezuela: epidemiologic correlates of common spoligotypes and a large clonal cluster defined by MIRU-VNTR-24.

Abadía E, Sequera M, Ortega D, Méndez MV, Escalona A, Da Mata O, Izarra E, Rojas Y, Jaspe R, Motiwala AS, Alland D, de Waard J, Takiff HE.

BMC Infect Dis. 2009 Aug 6;9:122. doi: 10.1186/1471-2334-9-122.

PMID:
19660112
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

[New era in molecular epidemiology of tuberculosis in Japan].

Takashima T, Iwamoto T.

Kekkaku. 2006 Nov;81(11):693-707. Review. Japanese.

PMID:
17154049
[PubMed - indexed for MEDLINE]
16.

MIRU-VNTR profiles of three major Mycobacterium tuberculosis spoligotypes found in western India.

Chatterjee A, Mistry N.

Tuberculosis (Edinb). 2013 Mar;93(2):250-6. doi: 10.1016/j.tube.2012.10.004. Epub 2012 Dec 5.

PMID:
23219234
[PubMed - indexed for MEDLINE]
Free Article
17.

spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex.

Tang C, Reyes JF, Luciani F, Francis AR, Tanaka MM.

Bioinformatics. 2008 Oct 15;24(20):2414-5. doi: 10.1093/bioinformatics/btn434. Epub 2008 Aug 18.

PMID:
18710872
[PubMed - indexed for MEDLINE]
Free Article
18.

Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis.

Allix-Béguec C, Fauville-Dufaux M, Supply P.

J Clin Microbiol. 2008 Apr;46(4):1398-406. doi: 10.1128/JCM.02089-07. Epub 2008 Jan 30.

PMID:
18234864
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Evaluation of 24-locus MIRU-VNTR in extrapulmonary specimens: study from a tertiary centre in Mumbai.

Vadwai V, Shetty A, Supply P, Rodrigues C.

Tuberculosis (Edinb). 2012 May;92(3):264-72. doi: 10.1016/j.tube.2012.01.002. Epub 2012 Feb 8.

PMID:
22321730
[PubMed - indexed for MEDLINE]
20.

MIRU-VNTR analysis of the Mycobacterium tuberculosis isolates from three provinces of Iran.

Zamani S, Aflaki M, Fooladi AA, Darban-Sarokhalil D, Bameri Z, Khazaee S, Nasiri MJ, Feizabadi MM.

Scand J Infect Dis. 2013 Feb;45(2):124-30. doi: 10.3109/00365548.2012.717233. Epub 2012 Sep 6.

PMID:
22954102
[PubMed - indexed for MEDLINE]
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