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Results: 1 to 20 of 103

1.

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R.

ISME J. 2012 Aug;6(8):1621-4. doi: 10.1038/ismej.2012.8. Epub 2012 Mar 8.

PMID:
22402401
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Towards clinical molecular diagnosis of inherited cardiac conditions: a comparison of bench-top genome DNA sequencers.

Li X, Buckton AJ, Wilkinson SL, John S, Walsh R, Novotny T, Valaskova I, Gupta M, Game L, Barton PJ, Cook SA, Ware JS.

PLoS One. 2013 Jul 4;8(7):e67744. doi: 10.1371/journal.pone.0067744. Print 2013.

PMID:
23861798
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD.

Appl Environ Microbiol. 2013 Sep;79(17):5112-20. doi: 10.1128/AEM.01043-13. Epub 2013 Jun 21.

PMID:
23793624
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing.

Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG.

Nat Methods. 2013 Jan;10(1):57-9. doi: 10.1038/nmeth.2276. Epub 2012 Dec 2.

PMID:
23202435
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

BIPES, a cost-effective high-throughput method for assessing microbial diversity.

Zhou HW, Li DF, Tam NF, Jiang XT, Zhang H, Sheng HF, Qin J, Liu X, Zou F.

ISME J. 2011 Apr;5(4):741-9. doi: 10.1038/ismej.2010.160. Epub 2010 Oct 21.

PMID:
20962877
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform.

Fadrosh DW, Ma B, Gajer P, Sengamalay N, Ott S, Brotman RM, Ravel J.

Microbiome. 2014 Feb 24;2(1):6. doi: 10.1186/2049-2618-2-6.

PMID:
24558975
[PubMed]
Free PMC Article
7.

Lane-by-lane sequencing using Illumina's Genome Analyzer II.

Gravina MT, Lin JH, Levine SS.

Biotechniques. 2013 May;54(5):265-9. doi: 10.2144/000114032.

PMID:
23662897
[PubMed - indexed for MEDLINE]
Free Article
8.

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys.

Werner JJ, Zhou D, Caporaso JG, Knight R, Angenent LT.

ISME J. 2012 Jul;6(7):1273-6. doi: 10.1038/ismej.2011.186. Epub 2011 Dec 15. No abstract available.

PMID:
22170427
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4516-22. doi: 10.1073/pnas.1000080107. Epub 2010 Jun 3.

PMID:
20534432
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems.

Minoche AE, Dohm JC, Himmelbauer H.

Genome Biol. 2011 Nov 8;12(11):R112. doi: 10.1186/gb-2011-12-11-r112.

PMID:
22067484
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparison of sequencing platforms for single nucleotide variant calls in a human sample.

Ratan A, Miller W, Guillory J, Stinson J, Seshagiri S, Schuster SC.

PLoS One. 2013;8(2):e55089. doi: 10.1371/journal.pone.0055089. Epub 2013 Feb 6.

PMID:
23405114
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Rethinking microbial diversity analysis in the high throughput sequencing era.

Lemos LN, Fulthorpe RR, Triplett EW, Roesch LF.

J Microbiol Methods. 2011 Jul;86(1):42-51. doi: 10.1016/j.mimet.2011.03.014. Epub 2011 Mar 30.

PMID:
21457733
[PubMed - indexed for MEDLINE]
Free Article
13.

Advancing our understanding of the human microbiome using QIIME.

Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R.

Methods Enzymol. 2013;531:371-444. doi: 10.1016/B978-0-12-407863-5.00019-8.

PMID:
24060131
[PubMed - indexed for MEDLINE]
14.

High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions.

Amir A, Zeisel A, Zuk O, Elgart M, Stern S, Shamir O, Turnbaugh PJ, Soen Y, Shental N.

Nucleic Acids Res. 2013 Dec;41(22):e205. doi: 10.1093/nar/gkt1070. Epub 2013 Nov 7.

PMID:
24214960
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.

Lou DI, Hussmann JA, McBee RM, Acevedo A, Andino R, Press WH, Sawyer SL.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19872-7. doi: 10.1073/pnas.1319590110. Epub 2013 Nov 15.

PMID:
24243955
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y.

BMC Genomics. 2012 Jul 24;13:341. doi: 10.1186/1471-2164-13-341.

PMID:
22827831
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.

Boisvert S, Laviolette F, Corbeil J.

J Comput Biol. 2010 Nov;17(11):1519-33. doi: 10.1089/cmb.2009.0238. Epub 2010 Oct 20.

PMID:
20958248
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Phase-defined complete sequencing of the HLA genes by next-generation sequencing.

Hosomichi K, Jinam TA, Mitsunaga S, Nakaoka H, Inoue I.

BMC Genomics. 2013 May 28;14:355. doi: 10.1186/1471-2164-14-355.

PMID:
23714642
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches.

Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H.

J Microbiol Methods. 2012 Oct;91(1):106-13. doi: 10.1016/j.mimet.2012.07.017. Epub 2012 Jul 28. Review.

PMID:
22849829
[PubMed - indexed for MEDLINE]
20.

Low sequencing efforts bias analyses of shared taxa in microbial communities.

Lemos LN, Fulthorpe RR, Roesch LF.

Folia Microbiol (Praha). 2012 Sep;57(5):409-13. doi: 10.1007/s12223-012-0155-0. Epub 2012 May 5.

PMID:
22562492
[PubMed - indexed for MEDLINE]

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