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Sumoylation of transcription factor Gcn4 facilitates its Srb10-mediated clearance from promoters in yeast.

Rosonina E, Duncan SM, Manley JL.

Genes Dev. 2012 Feb 15;26(4):350-5. doi: 10.1101/gad.184689.111.


The chromatin scaffold protein SAFB1 localizes SUMO-1 to the promoters of ribosomal protein genes to facilitate transcription initiation and splicing.

Liu HW, Banerjee T, Guan X, Freitas MA, Parvin JD.

Nucleic Acids Res. 2015 Apr 20;43(7):3605-13. doi: 10.1093/nar/gkv246. Epub 2015 Mar 23.


Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes.

Chymkowitch P, Nguéa P A, Aanes H, Koehler CJ, Thiede B, Lorenz S, Meza-Zepeda LA, Klungland A, Enserink JM.

Genome Res. 2015 Jun;25(6):897-906. doi: 10.1101/gr.185793.114. Epub 2015 Mar 23.


Sumoylation controls the timing of Tup1-mediated transcriptional deactivation.

Ng CH, Akhter A, Yurko N, Burgener JM, Rosonina E, Manley JL.

Nat Commun. 2015 Mar 13;6:6610. doi: 10.1038/ncomms7610.


Truncated variants of the GCN4 transcription activator protein bind DNA with dramatically different dynamical motifs.

McHarris DM, Barr DA.

J Chem Inf Model. 2014 Oct 27;54(10):2869-75. doi: 10.1021/ci500448e. Epub 2014 Sep 22.


Sumoylation and transcription regulation at nuclear pores.

Texari L, Stutz F.

Chromosoma. 2015 Mar;124(1):45-56. doi: 10.1007/s00412-014-0481-x. Epub 2014 Aug 30.


A sequence-specific transcription activator motif and powerful synthetic variants that bind Mediator using a fuzzy protein interface.

Warfield L, Tuttle LM, Pacheco D, Klevit RE, Hahn S.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):E3506-13. doi: 10.1073/pnas.1412088111. Epub 2014 Aug 13.


Accumulation of a threonine biosynthetic intermediate attenuates general amino acid control by accelerating degradation of Gcn4 via Pho85 and Cdk8.

Rawal Y, Qiu H, Hinnebusch AG.

PLoS Genet. 2014 Jul 31;10(7):e1004534. doi: 10.1371/journal.pgen.1004534. eCollection 2014 Jul.


Regulating global sumoylation by a MAP kinase Hog1 and its potential role in osmo-tolerance in yeast.

Abu Irqeba A, Li Y, Panahi M, Zhu M, Wang Y.

PLoS One. 2014 Feb 3;9(2):e87306. doi: 10.1371/journal.pone.0087306. eCollection 2014.


Cyclin C: an inducer of mitochondrial division hidden in the nucleus.

Adachi Y, Sesaki H.

Dev Cell. 2014 Jan 27;28(2):112-4. doi: 10.1016/j.devcel.2014.01.010.


Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data.

Zeigler RD, Cohen BA.

Nucleic Acids Res. 2014 Feb;42(4):2224-34. doi: 10.1093/nar/gkt1230. Epub 2013 Nov 27.


Functional analyses of NSF1 in wine yeast using interconnected correlation clustering and molecular analyses.

Bessonov K, Walkey CJ, Shelp BJ, van Vuuren HJ, Chiu D, van der Merwe G.

PLoS One. 2013 Oct 9;8(10):e77192. doi: 10.1371/journal.pone.0077192. eCollection 2013.


The nuclear pore regulates GAL1 gene transcription by controlling the localization of the SUMO protease Ulp1.

Texari L, Dieppois G, Vinciguerra P, Contreras MP, Groner A, Letourneau A, Stutz F.

Mol Cell. 2013 Sep 26;51(6):807-18. doi: 10.1016/j.molcel.2013.08.047.


High-throughput genetic and gene expression analysis of the RNAPII-CTD reveals unexpected connections to SRB10/CDK8.

Aristizabal MJ, Negri GL, Benschop JJ, Holstege FC, Krogan NJ, Kobor MS.

PLoS Genet. 2013 Aug;9(8):e1003758. doi: 10.1371/journal.pgen.1003758. Epub 2013 Aug 29.


Mutual cross talk between the regulators Hac1 of the unfolded protein response and Gcn4 of the general amino acid control of Saccharomyces cerevisiae.

Herzog B, Popova B, Jakobshagen A, Shahpasandzadeh H, Braus GH.

Eukaryot Cell. 2013 Aug;12(8):1142-54. doi: 10.1128/EC.00123-13. Epub 2013 Jun 21.


Vps factors are required for efficient transcription elongation in budding yeast.

Gaur NA, Hasek J, Brickner DG, Qiu H, Zhang F, Wong CM, Malcova I, Vasicova P, Brickner JH, Hinnebusch AG.

Genetics. 2013 Mar;193(3):829-51. doi: 10.1534/genetics.112.146308. Epub 2013 Jan 18.


Sumoylation regulates Kap114-mediated nuclear transport.

Rothenbusch U, Sawatzki M, Chang Y, Caesar S, Schlenstedt G.

EMBO J. 2012 May 30;31(11):2461-72. doi: 10.1038/emboj.2012.102. Epub 2012 May 4.


Mediator acts upstream of the transcriptional activator Gal4.

Ang K, Ee G, Ang E, Koh E, Siew WL, Chan YM, Nur S, Tan YS, Lehming N.

PLoS Biol. 2012;10(3):e1001290. doi: 10.1371/journal.pbio.1001290. Epub 2012 Mar 27.


Rational diversification of a promoter providing fine-tuned expression and orthogonal regulation for synthetic biology.

Blount BA, Weenink T, Vasylechko S, Ellis T.

PLoS One. 2012;7(3):e33279. doi: 10.1371/journal.pone.0033279. Epub 2012 Mar 19.

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