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Results: 1 to 20 of 185

1.

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression.

Vining KJ, Pomraning KR, Wilhelm LJ, Priest HD, Pellegrini M, Mockler TC, Freitag M, Strauss SH.

BMC Genomics. 2012 Jan 17;13:27. doi: 10.1186/1471-2164-13-27.

PMID:
22251412
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa.

Vining K, Pomraning KR, Wilhelm LJ, Ma C, Pellegrini M, Di Y, Mockler TC, Freitag M, Strauss SH.

BMC Plant Biol. 2013 Jun 25;13:92. doi: 10.1186/1471-2229-13-92.

PMID:
23799904
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state.

Lafon-Placette C, Faivre-Rampant P, Delaunay A, Street N, Brignolas F, Maury S.

New Phytol. 2013 Jan;197(2):416-30. doi: 10.1111/nph.12026. Epub 2012 Dec 17.

PMID:
23253333
[PubMed - indexed for MEDLINE]
4.

Tissue-specific differences in cytosine methylation and their association with differential gene expression in sorghum.

Zhang M, Xu C, von Wettstein D, Liu B.

Plant Physiol. 2011 Aug;156(4):1955-66. doi: 10.1104/pp.111.176842. Epub 2011 Jun 1.

PMID:
21632971
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Atypical epigenetic mark in an atypical location: cytosine methylation at asymmetric (CNN) sites within the body of a non-repetitive tomato gene.

González RM, Ricardi MM, Iusem ND.

BMC Plant Biol. 2011 May 20;11(1):94. doi: 10.1186/1471-2229-11-94.

PMID:
21599976
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE.

Nature. 2008 Mar 13;452(7184):215-9. doi: 10.1038/nature06745. Epub 2008 Feb 17.

PMID:
18278030
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

DNA cytosine methylation in plant development.

Zhang M, Kimatu JN, Xu K, Liu B.

J Genet Genomics. 2010 Jan;37(1):1-12. doi: 10.1016/S1673-8527(09)60020-5. Review.

PMID:
20171573
[PubMed - indexed for MEDLINE]
8.

Large-scale methylation analysis of human genomic DNA reveals tissue-specific differences between the methylation profiles of genes and pseudogenes.

Grunau C, Hindermann W, Rosenthal A.

Hum Mol Genet. 2000 Nov 1;9(18):2651-63. Erratum in: Hum Mol Genet 2001 Jan 1;10(1):85-7.

PMID:
11063724
[PubMed - indexed for MEDLINE]
Free Article
9.

The developing xylem transcriptome and genome-wide analysis of alternative splicing in Populus trichocarpa (black cottonwood) populations.

Bao H, Li E, Mansfield SD, Cronk QC, El-Kassaby YA, Douglas CJ.

BMC Genomics. 2013 May 29;14:359. doi: 10.1186/1471-2164-14-359.

PMID:
23718132
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice.

Ngezahayo F, Xu C, Wang H, Jiang L, Pang J, Liu B.

BMC Plant Biol. 2009 Jul 15;9:91. doi: 10.1186/1471-2229-9-91.

PMID:
19604382
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.

Zhang B, Zhou Y, Lin N, Lowdon RF, Hong C, Nagarajan RP, Cheng JB, Li D, Stevens M, Lee HJ, Xing X, Zhou J, Sundaram V, Elliott G, Gu J, Shi T, Gascard P, Sigaroudinia M, Tlsty TD, Kadlecek T, Weiss A, O'Geen H, Farnham PJ, Maire CL, Ligon KL, Madden PA, Tam A, Moore R, Hirst M, Marra MA, Zhang B, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1522-40. doi: 10.1101/gr.156539.113. Epub 2013 Jun 26.

PMID:
23804400
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.

Shen L, Kondo Y, Guo Y, Zhang J, Zhang L, Ahmed S, Shu J, Chen X, Waterland RA, Issa JP.

PLoS Genet. 2007 Oct;3(10):2023-36. Epub 2007 Sep 10.

PMID:
17967063
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression.

Barakat A, Bagniewska-Zadworna A, Choi A, Plakkat U, DiLoreto DS, Yellanki P, Carlson JE.

BMC Plant Biol. 2009 Mar 6;9:26. doi: 10.1186/1471-2229-9-26.

PMID:
19267902
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Studying the epigenome using next generation sequencing.

Ku CS, Naidoo N, Wu M, Soong R.

J Med Genet. 2011 Nov;48(11):721-30. doi: 10.1136/jmedgenet-2011-100242. Epub 2011 Aug 8. Review.

PMID:
21825079
[PubMed - indexed for MEDLINE]
15.

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR.

Genome Res. 2013 Oct;23(10):1663-74. doi: 10.1101/gr.152538.112. Epub 2013 Jun 5.

PMID:
23739894
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Epigenetic natural variation in Arabidopsis thaliana.

Vaughn MW, Tanurdzić M, Lippman Z, Jiang H, Carrasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA.

PLoS Biol. 2007 Jul;5(7):e174. Epub 2007 Jun 19.

PMID:
17579518
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome-wide methylation and expression profiling identifies promoter characteristics affecting demethylation-induced gene up-regulation in melanoma.

Rubinstein JC, Tran N, Ma S, Halaban R, Krauthammer M.

BMC Med Genomics. 2010 Feb 9;3:4. doi: 10.1186/1755-8794-3-4.

PMID:
20144234
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Sex-specific DNA methylation and gene expression in andromonoecious poplar.

Song Y, Ma K, Bo W, Zhang Z, Zhang D.

Plant Cell Rep. 2012 Aug;31(8):1393-405. doi: 10.1007/s00299-012-1255-7. Epub 2012 Apr 4.

PMID:
22476437
[PubMed - indexed for MEDLINE]
19.

RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids.

Chen M, Ha M, Lackey E, Wang J, Chen ZJ.

Genetics. 2008 Apr;178(4):1845-58. doi: 10.1534/genetics.107.086272.

PMID:
18430920
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Heritable epigenetic variation among maize inbreds.

Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM.

PLoS Genet. 2011 Nov;7(11):e1002372. doi: 10.1371/journal.pgen.1002372. Epub 2011 Nov 17.

PMID:
22125494
[PubMed - indexed for MEDLINE]
Free PMC Article

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