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Results: 1 to 20 of 131

1.

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Kodama Y, Mashima J, Kaminuma E, Gojobori T, Ogasawara O, Takagi T, Okubo K, Nakamura Y.

Nucleic Acids Res. 2012 Jan;40(Database issue):D38-42. doi: 10.1093/nar/gkr994. Epub 2011 Nov 22.

PMID:
22110025
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

DDBJ new system and service refactoring.

Ogasawara O, Mashima J, Kodama Y, Kaminuma E, Nakamura Y, Okubo K, Takagi T.

Nucleic Acids Res. 2013 Jan;41(Database issue):D25-9. doi: 10.1093/nar/gks1152. Epub 2012 Nov 24.

PMID:
23180790
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DDBJ progress report.

Kaminuma E, Kosuge T, Kodama Y, Aono H, Mashima J, Gojobori T, Sugawara H, Ogasawara O, Takagi T, Okubo K, Nakamura Y.

Nucleic Acids Res. 2011 Jan;39(Database issue):D22-7. doi: 10.1093/nar/gkq1041. Epub 2010 Nov 9.

PMID:
21062814
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

DDBJ progress report: a new submission system for leading to a correct annotation.

Kosuge T, Mashima J, Kodama Y, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y.

Nucleic Acids Res. 2014 Jan;42(Database issue):D44-9. doi: 10.1093/nar/gkt1066. Epub 2013 Nov 4.

PMID:
24194602
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The Sequence Read Archive: explosive growth of sequencing data.

Kodama Y, Shumway M, Leinonen R; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2012 Jan;40(Database issue):D54-6. doi: 10.1093/nar/gkr854. Epub 2011 Oct 18.

PMID:
22009675
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

DDBJ launches a new archive database with analytical tools for next-generation sequence data.

Kaminuma E, Mashima J, Kodama Y, Gojobori T, Ogasawara O, Okubo K, Takagi T, Nakamura Y.

Nucleic Acids Res. 2010 Jan;38(Database issue):D33-8. doi: 10.1093/nar/gkp847. Epub 2009 Oct 22.

PMID:
19850725
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The sequence read archive.

Leinonen R, Sugawara H, Shumway M; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2011 Jan;39(Database issue):D19-21. doi: 10.1093/nar/gkq1019. Epub 2010 Nov 9.

PMID:
21062823
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Archiving next generation sequencing data.

Shumway M, Cochrane G, Sugawara H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D870-1. doi: 10.1093/nar/gkp1078. Epub 2009 Dec 3.

PMID:
19965774
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data.

Nagasaki H, Mochizuki T, Kodama Y, Saruhashi S, Morizaki S, Sugawara H, Ohyanagi H, Kurata N, Okubo K, Takagi T, Kaminuma E, Nakamura Y.

DNA Res. 2013 Aug;20(4):383-90. doi: 10.1093/dnares/dst017. Epub 2013 May 8.

PMID:
23657089
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies.

Kodama Y, Kaminuma E, Saruhashi S, Ikeo K, Sugawara H, Tateno Y, Nakamura Y.

Adv Exp Med Biol. 2010;680:125-35. doi: 10.1007/978-1-4419-5913-3_15.

PMID:
20865494
[PubMed - indexed for MEDLINE]
11.

ArrayExpress update--trends in database growth and links to data analysis tools.

Rustici G, Kolesnikov N, Brandizi M, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Ison J, Keays M, Kurbatova N, Malone J, Mani R, Mupo A, Pedro Pereira R, Pilicheva E, Rung J, Sharma A, Tang YA, Ternent T, Tikhonov A, Welter D, Williams E, Brazma A, Parkinson H, Sarkans U.

Nucleic Acids Res. 2013 Jan;41(Database issue):D987-90. doi: 10.1093/nar/gks1174. Epub 2012 Nov 27.

PMID:
23193272
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

DDBJ dealing with mass data produced by the second generation sequencer.

Sugawara H, Ikeo K, Fukuchi S, Gojobori T, Tateno Y.

Nucleic Acids Res. 2009 Jan;37(Database issue):D16-8. doi: 10.1093/nar/gkn724. Epub 2008 Oct 16.

PMID:
18927114
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

DDBJ in collaboration with mass-sequencing teams on annotation.

Tateno Y, Saitou N, Okubo K, Sugawara H, Gojobori T.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D25-8.

PMID:
15608189
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

DNA Data Bank of Japan (DDBJ) in XML.

Miyazaki S, Sugawara H, Gojobori T, Tateno Y.

Nucleic Acids Res. 2003 Jan 1;31(1):13-6.

PMID:
12519938
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

DDBJ with new system and face.

Sugawara H, Ogasawara O, Okubo K, Gojobori T, Tateno Y.

Nucleic Acids Res. 2008 Jan;36(Database issue):D22-4. Epub 2007 Oct 25.

PMID:
17962300
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

DNA Data Bank of Japan (DDBJ) for genome scale research in life science.

Tateno Y, Imanishi T, Miyazaki S, Fukami-Kobayashi K, Saitou N, Sugawara H, Gojobori T.

Nucleic Acids Res. 2002 Jan 1;30(1):27-30.

PMID:
11752245
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

GenBank.

Benson DA, Karsch-Mizrachi I, Clark K, Lipman DJ, Ostell J, Sayers EW.

Nucleic Acids Res. 2012 Jan;40(Database issue):D48-53. doi: 10.1093/nar/gkr1202. Epub 2011 Dec 5.

PMID:
22144687
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.

Parkinson H, Sarkans U, Kolesnikov N, Abeygunawardena N, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Holloway E, Kurbatova N, Lukk M, Malone J, Mani R, Pilicheva E, Rustici G, Sharma A, Williams E, Adamusiak T, Brandizi M, Sklyar N, Brazma A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1002-4. doi: 10.1093/nar/gkq1040. Epub 2010 Nov 10.

PMID:
21071405
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

GenBank.

Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.

Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42. doi: 10.1093/nar/gks1195. Epub 2012 Nov 27.

PMID:
23193287
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Improvements to services at the European Nucleotide Archive.

Leinonen R, Akhtar R, Birney E, Bonfield J, Bower L, Corbett M, Cheng Y, Demiralp F, Faruque N, Goodgame N, Gibson R, Hoad G, Hunter C, Jang M, Leonard S, Lin Q, Lopez R, Maguire M, McWilliam H, Plaister S, Radhakrishnan R, Sobhany S, Slater G, Ten Hoopen P, Valentin F, Vaughan R, Zalunin V, Zerbino D, Cochrane G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D39-45. doi: 10.1093/nar/gkp998. Epub 2009 Nov 11.

PMID:
19906712
[PubMed - indexed for MEDLINE]
Free PMC Article
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