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Results: 1 to 20 of 143

1.

Deep proteome and transcriptome mapping of a human cancer cell line.

Nagaraj N, Wisniewski JR, Geiger T, Cox J, Kircher M, Kelso J, Pääbo S, Mann M.

Mol Syst Biol. 2011 Nov 8;7:548. doi: 10.1038/msb.2011.81.

PMID:
22068331
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Transcriptome and proteome exploration to provide a resource for the study of Agrocybe aegerita.

Wang M, Gu B, Huang J, Jiang S, Chen Y, Yin Y, Pan Y, Yu G, Li Y, Wong BH, Liang Y, Sun H.

PLoS One. 2013;8(2):e56686. doi: 10.1371/journal.pone.0056686. Epub 2013 Feb 13.

PMID:
23418592
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures.

Desgagné-Penix I, Khan MF, Schriemer DC, Cram D, Nowak J, Facchini PJ.

BMC Plant Biol. 2010 Nov 18;10:252. doi: 10.1186/1471-2229-10-252.

PMID:
21083930
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

First insight into the human liver proteome from PROTEOME(SKY)-LIVER(Hu) 1.0, a publicly available database.

Chinese Human Liver Proteome Profiling Consortium.

J Proteome Res. 2010 Jan;9(1):79-94. doi: 10.1021/pr900532r.

PMID:
19653699
[PubMed - indexed for MEDLINE]
5.

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events.

Menschaert G, Van Criekinge W, Notelaers T, Koch A, Crappé J, Gevaert K, Van Damme P.

Mol Cell Proteomics. 2013 Jul;12(7):1780-90. doi: 10.1074/mcp.M113.027540. Epub 2013 Feb 21.

PMID:
23429522
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system.

de Godoy LM, Olsen JV, de Souza GA, Li G, Mortensen P, Mann M.

Genome Biol. 2006;7(6):R50.

PMID:
16784548
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Proteome profiling of human epithelial ovarian cancer cell line TOV-112D.

Gagné JP, Gagné P, Hunter JM, Bonicalzi ME, Lemay JF, Kelly I, Le Page C, Provencher D, Mes-Masson AM, Droit A, Bourgais D, Poirier GG.

Mol Cell Biochem. 2005 Jul;275(1-2):25-55.

PMID:
16335783
[PubMed - indexed for MEDLINE]
8.

Identification of a novel protein isoform derived from cancer-related splicing variants using combined analysis of transcriptome and proteome.

Hatakeyama K, Ohshima K, Fukuda Y, Ogura S, Terashima M, Yamaguchi K, Mochizuki T.

Proteomics. 2011 Jun;11(11):2275-82. doi: 10.1002/pmic.201100016. Epub 2011 May 5.

PMID:
21548097
[PubMed - indexed for MEDLINE]
9.

Global analysis of the cortical neuron proteome.

Yu LR, Conrads TP, Uo T, Kinoshita Y, Morrison RS, Lucas DA, Chan KC, Blonder J, Issaq HJ, Veenstra TD.

Mol Cell Proteomics. 2004 Sep;3(9):896-907. Epub 2004 Jun 30.

PMID:
15231876
[PubMed - indexed for MEDLINE]
Free Article
10.

Global investigation of p53-induced apoptosis through quantitative proteomic profiling using comparative amino acid-coded tagging.

Gu S, Liu Z, Pan S, Jiang Z, Lu H, Amit O, Bradbury EM, Hu CA, Chen X.

Mol Cell Proteomics. 2004 Oct;3(10):998-1008. Epub 2004 Jul 28.

PMID:
15284338
[PubMed - indexed for MEDLINE]
Free Article
11.

Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle.

Kirsch R, Wielsch N, Vogel H, Svatoš A, Heckel DG, Pauchet Y.

BMC Genomics. 2012 Nov 1;13:587. doi: 10.1186/1471-2164-13-587.

PMID:
23116131
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.

Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, Sánchez Alvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W.

Genome Res. 2011 Jul;21(7):1193-200. doi: 10.1101/gr.113779.110. Epub 2011 May 2.

PMID:
21536722
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The protein expression landscape of the Arabidopsis root.

Petricka JJ, Schauer MA, Megraw M, Breakfield NW, Thompson JW, Georgiev S, Soderblom EJ, Ohler U, Moseley MA, Grossniklaus U, Benfey PN.

Proc Natl Acad Sci U S A. 2012 May 1;109(18):6811-8. doi: 10.1073/pnas.1202546109. Epub 2012 Mar 23.

PMID:
22447775
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

[Analysis of human gastric cancer by transcriptome and proteome profiling].

Li W, Liu BY, Zhang XQ, Yang YQ, Li JF, Tang KL, Zhang QH, Chen XH, Zhu ZG.

Zhonghua Wei Chang Wai Ke Za Zhi. 2009 Jan;12(1):52-6. Chinese.

PMID:
19145505
[PubMed - indexed for MEDLINE]
15.

Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity.

He R, Kim MJ, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR.

Am J Bot. 2012 Feb;99(2):232-47. doi: 10.3732/ajb.1100429. Epub 2012 Feb 1.

PMID:
22301892
[PubMed - indexed for MEDLINE]
Free Article
16.

Tribolium castaneum larval gut transcriptome and proteome: A resource for the study of the coleopteran gut.

Morris K, Lorenzen MD, Hiromasa Y, Tomich JM, Oppert C, Elpidina EN, Vinokurov K, Jurat-Fuentes JL, Fabrick J, Oppert B.

J Proteome Res. 2009 Aug;8(8):3889-98. doi: 10.1021/pr900168z.

PMID:
19545177
[PubMed - indexed for MEDLINE]
17.

Genome-wide transcriptome and proteome analysis on different developmental stages of Cordyceps militaris.

Yin Y, Yu G, Chen Y, Jiang S, Wang M, Jin Y, Lan X, Liang Y, Sun H.

PLoS One. 2012;7(12):e51853. doi: 10.1371/journal.pone.0051853. Epub 2012 Dec 14.

PMID:
23251642
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Global proteome discovery using an online three-dimensional LC-MS/MS.

Wei J, Sun J, Yu W, Jones A, Oeller P, Keller M, Woodnutt G, Short JM.

J Proteome Res. 2005 May-Jun;4(3):801-8.

PMID:
15952726
[PubMed - indexed for MEDLINE]
19.

Quantitative proteome and transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions.

Sun N, Pan C, Nickell S, Mann M, Baumeister W, Nagy I.

J Proteome Res. 2010 Sep 3;9(9):4839-50. doi: 10.1021/pr100567u.

PMID:
20669988
[PubMed - indexed for MEDLINE]
20.

Approaches for systematic proteome exploration.

Falk R, Ramström M, Ståhl S, Hober S.

Biomol Eng. 2007 Jun;24(2):155-68. Epub 2007 Feb 6. Review.

PMID:
17376740
[PubMed - indexed for MEDLINE]

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