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Items: 1 to 20 of 101

1.

Algorithm discovery by protein folding game players.

Khatib F, Cooper S, Tyka MD, Xu K, Makedon I, Popovic Z, Baker D, Players F.

Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):18949-53. doi: 10.1073/pnas.1115898108. Epub 2011 Nov 7.

2.

Predicting protein structures with a multiplayer online game.

Cooper S, Khatib F, Treuille A, Barbero J, Lee J, Beenen M, Leaver-Fay A, Baker D, Popović Z, Players F.

Nature. 2010 Aug 5;466(7307):756-60. doi: 10.1038/nature09304.

3.

Exploring the quantum speed limit with computer games.

Sørensen JJ, Pedersen MK, Munch M, Haikka P, Jensen JH, Planke T, Andreasen MG, Gajdacz M, Mølmer K, Lieberoth A, Sherson JF.

Nature. 2016 Apr 14;532(7598):210-3. doi: 10.1038/nature17620.

PMID:
27075097
4.

Crystal structure of a monomeric retroviral protease solved by protein folding game players.

Khatib F, DiMaio F; Foldit Contenders Group; Foldit Void Crushers Group, Cooper S, Kazmierczyk M, Gilski M, Krzywda S, Zabranska H, Pichova I, Thompson J, Popović Z, Jaskolski M, Baker D.

Nat Struct Mol Biol. 2011 Sep 18;18(10):1175-7. doi: 10.1038/nsmb.2119. Erratum in: Nat Struct Mol Biol. 2012 Mar;19(3):364.

5.

Folding research recruits unconventional help.

Gross M.

Curr Biol. 2012 Jan 24;22(2):R35-8.

PMID:
22389910
6.

Centenary Award and Sir Frederick Gowland Hopkins Memorial Lecture. Protein folding, structure prediction and design.

Baker D.

Biochem Soc Trans. 2014 Apr;42(2):225-9. doi: 10.1042/BST20130055.

PMID:
24646222
7.

Dizeez: an online game for human gene-disease annotation.

Loguercio S, Good BM, Su AI.

PLoS One. 2013 Aug 7;8(8):e71171. doi: 10.1371/journal.pone.0071171. eCollection 2013. Erratum in: PLoS One. 2013;8(8). doi:10.1371/annotation/efa93b55-c8f0-4943-b922-a585d68f0bd0.

8.

Increased Diels-Alderase activity through backbone remodeling guided by Foldit players.

Eiben CB, Siegel JB, Bale JB, Cooper S, Khatib F, Shen BW, Players F, Stoddard BL, Popovic Z, Baker D.

Nat Biotechnol. 2012 Jan 22;30(2):190-2. doi: 10.1038/nbt.2109.

9.
10.

Player guild dynamics and evolution in massively multiplayer online games.

Chen CH, Sun CT, Hsieh J.

Cyberpsychol Behav. 2008 Jun;11(3):293-301. doi: 10.1089/cpb.2007.0066.

PMID:
18537499
11.

Protein folding in hydrophobic-polar lattice model: a flexible ant-colony optimization approach.

Hu XM, Zhang J, Xiao J, Li Y.

Protein Pept Lett. 2008;15(5):469-77.

PMID:
18537736
12.

Games with a scientific purpose.

Good BM, Su AI.

Genome Biol. 2011 Dec 28;12(12):135. doi: 10.1186/gb-2011-12-12-135.

13.

State-of-the-art bioinformatics protein structure prediction tools (Review).

Pavlopoulou A, Michalopoulos I.

Int J Mol Med. 2011 Sep;28(3):295-310. doi: 10.3892/ijmm.2011.705. Epub 2011 May 23. Review.

PMID:
21617841
14.

Evolutionary games in the multiverse.

Gokhale CS, Traulsen A.

Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5500-4. doi: 10.1073/pnas.0912214107. Epub 2010 Mar 8.

15.

The cure: design and evaluation of a crowdsourcing game for gene selection for breast cancer survival prediction.

Good BM, Loguercio S, Griffith OL, Nanis M, Wu C, Su AI.

JMIR Serious Games. 2014 Jul 29;2(2):e7. doi: 10.2196/games.3350.

16.

The simulation of the three-dimensional lattice hydrophobic-polar protein folding.

Guo YZ, Feng EM.

J Chem Phys. 2006 Dec 21;125(23):234703.

PMID:
17190566
17.

SeqRate: sequence-based protein folding type classification and rates prediction.

Lin GN, Wang Z, Xu D, Cheng J.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S1. doi: 10.1186/1471-2105-11-S3-S1.

18.

Detailed protein sequence alignment based on Spectral Similarity Score (SSS).

Gupta K, Thomas D, Vidya SV, Venkatesh KV, Ramakumar S.

BMC Bioinformatics. 2005 Apr 23;6:105.

19.

The road not taken: retreat and diverge in local search for simplified protein structure prediction.

Shatabda S, Newton MA, Rashid MA, Pham DN, Sattar A.

BMC Bioinformatics. 2013;14 Suppl 2:S19. doi: 10.1186/1471-2105-14-S2-S19. Epub 2013 Jan 21.

20.

Folding small proteins via annealing stochastic approximation Monte Carlo.

Cheon S, Liang F.

Biosystems. 2011 Sep;105(3):243-9. doi: 10.1016/j.biosystems.2011.05.015. Epub 2011 Jun 6.

PMID:
21679746
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