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Results: 1 to 20 of 98

Similar articles for PubMed (Select 22064851)

1.

HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants.

Ward LD, Kellis M.

Nucleic Acids Res. 2012 Jan;40(Database issue):D930-4. doi: 10.1093/nar/gkr917. Epub 2011 Nov 7.

2.

A method to predict the impact of regulatory variants from DNA sequence.

Lee D, Gorkin DU, Baker M, Strober BJ, Asoni AL, McCallion AS, Beer MA.

Nat Genet. 2015 Jun 15. doi: 10.1038/ng.3331. [Epub ahead of print]

PMID:
26075791
3.

Human aging in the post-GWAS era: further insights reveal potential regulatory variants.

Haider SA, Faisal M.

Biogerontology. 2015 Aug;16(4):529-41. doi: 10.1007/s10522-015-9575-y. Epub 2015 Apr 17.

PMID:
25895066
4.

GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach.

Schmidt EM, Zhang J, Zhou W, Chen J, Mohlke KL, Chen YE, Willer CJ.

Bioinformatics. 2015 Apr 16. pii: btv201. [Epub ahead of print]

PMID:
25886982
5.

Spectacle: fast chromatin state annotation using spectral learning.

Song J, Chen KC.

Genome Biol. 2015 Feb 12;16:33. doi: 10.1186/s13059-015-0598-0.

6.

LocusTrack: Integrated visualization of GWAS results and genomic annotation.

Cuellar-Partida G, Renteria ME, MacGregor S.

Source Code Biol Med. 2015 Feb 3;10:1. doi: 10.1186/s13029-015-0032-8. eCollection 2015.

7.

In silico functional pathway annotation of 86 established prostate cancer risk variants.

Loo LW, Fong AY, Cheng I, Le Marchand L.

PLoS One. 2015 Feb 6;10(2):e0117873. doi: 10.1371/journal.pone.0117873. eCollection 2015.

8.

An integrative approach to predicting the functional effects of non-coding and coding sequence variation.

Shihab HA, Rogers MF, Gough J, Mort M, Cooper DN, Day IN, Gaunt TR, Campbell C.

Bioinformatics. 2015 May 15;31(10):1536-43. doi: 10.1093/bioinformatics/btv009. Epub 2015 Jan 11.

9.

DDIG-in: detecting disease-causing genetic variations due to frameshifting indels and nonsense mutations employing sequence and structural properties at nucleotide and protein levels.

Folkman L, Yang Y, Li Z, Stantic B, Sattar A, Mort M, Cooper DN, Liu Y, Zhou Y.

Bioinformatics. 2015 May 15;31(10):1599-606. doi: 10.1093/bioinformatics/btu862. Epub 2015 Jan 7.

PMID:
25573915
10.

Identifying causal regulatory SNPs in ChIP-seq enhancers.

Huang D, Ovcharenko I.

Nucleic Acids Res. 2015 Jan;43(1):225-36. doi: 10.1093/nar/gku1318. Epub 2014 Dec 17.

11.

Genetic Analysis Workshop 18 single-nucleotide variant prioritization based on protein impact, sequence conservation, and gene annotation.

Nalpathamkalam T, Derkach A, Paterson AD, Merico D.

BMC Proc. 2014 Jun 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S11. doi: 10.1186/1753-6561-8-S1-S11. eCollection 2014.

12.

Disease genomics: Triaging risk variants in the non-coding genome.

Koch L.

Nat Rev Genet. 2014 Dec;15(12):779. doi: 10.1038/nrg3862. Epub 2014 Nov 11. No abstract available.

PMID:
25385127
13.

Associating disease-related genetic variants in intergenic regions to the genes they impact.

Macintyre G, Jimeno Yepes A, Ong CS, Verspoor K.

PeerJ. 2014 Oct 23;2:e639. doi: 10.7717/peerj.639. eCollection 2014.

14.

Genetic and epigenetic fine mapping of causal autoimmune disease variants.

Farh KK, Marson A, Zhu J, Kleinewietfeld M, Housley WJ, Beik S, Shoresh N, Whitton H, Ryan RJ, Shishkin AA, Hatan M, Carrasco-Alfonso MJ, Mayer D, Luckey CJ, Patsopoulos NA, De Jager PL, Kuchroo VK, Epstein CB, Daly MJ, Hafler DA, Bernstein BE.

Nature. 2015 Feb 19;518(7539):337-43. doi: 10.1038/nature13835. Epub 2014 Oct 29.

PMID:
25363779
15.

SNPsnap: a Web-based tool for identification and annotation of matched SNPs.

Pers TH, Timshel P, Hirschhorn JN.

Bioinformatics. 2015 Feb 1;31(3):418-20. doi: 10.1093/bioinformatics/btu655. Epub 2014 Oct 13.

PMID:
25316677
16.

Enlight: web-based integration of GWAS results with biological annotations.

Guo Y, Conti DV, Wang K.

Bioinformatics. 2015 Jan 15;31(2):275-6. doi: 10.1093/bioinformatics/btu639. Epub 2014 Sep 26.

PMID:
25262152
17.

On the identification of potential regulatory variants within genome wide association candidate SNP sets.

Chen CY, Chang IS, Hsiung CA, Wasserman WW.

BMC Med Genomics. 2014 Jun 11;7:34. doi: 10.1186/1755-8794-7-34.

18.

Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression.

Li MJ, Yan B, Sham PC, Wang J.

Brief Bioinform. 2015 May;16(3):393-412. doi: 10.1093/bib/bbu018. Epub 2014 Jun 10.

PMID:
24916300
19.

LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs.

Ning S, Zhao Z, Ye J, Wang P, Zhi H, Li R, Wang T, Li X.

BMC Bioinformatics. 2014 May 20;15:152. doi: 10.1186/1471-2105-15-152.

20.

Comparison of sequence variants in transcriptomic control regions across 17 mouse genomes.

Nguyen C, Baten A, Morahan G.

Database (Oxford). 2014 Mar 18;2014:bau020. doi: 10.1093/database/bau020. Print 2014.

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