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Results: 1 to 20 of 297

1.

The evolution of metabolic networks of E. coli.

Baumler DJ, Peplinski RG, Reed JL, Glasner JD, Perna NT.

BMC Syst Biol. 2011 Nov 1;5:182. doi: 10.1186/1752-0509-5-182.

PMID:
22044664
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data.

Sun J, Gunzer F, Westendorf AM, Buer J, Scharfe M, Jarek M, Gössling F, Blöcker H, Zeng AP.

J Biotechnol. 2005 May 4;117(2):147-61.

PMID:
15823404
[PubMed - indexed for MEDLINE]
3.

Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays.

Dobrindt U, Agerer F, Michaelis K, Janka A, Buchrieser C, Samuelson M, Svanborg C, Gottschalk G, Karch H, Hacker J.

J Bacteriol. 2003 Mar;185(6):1831-40.

PMID:
12618447
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Core and panmetabolism in Escherichia coli.

Vieira G, Sabarly V, Bourguignon PY, Durot M, Le Fèvre F, Mornico D, Vallenet D, Bouvet O, Denamur E, Schachter V, Médigue C.

J Bacteriol. 2011 Mar;193(6):1461-72. doi: 10.1128/JB.01192-10. Epub 2011 Jan 14.

PMID:
21239590
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain.

AbuOun M, Suthers PF, Jones GI, Carter BR, Saunders MP, Maranas CD, Woodward MJ, Anjum MF.

J Biol Chem. 2009 Oct 23;284(43):29480-8. doi: 10.1074/jbc.M109.005868. Epub 2009 Aug 18.

PMID:
19690172
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli.

Archer CT, Kim JF, Jeong H, Park JH, Vickers CE, Lee SY, Nielsen LK.

BMC Genomics. 2011 Jan 6;12:9. doi: 10.1186/1471-2164-12-9.

PMID:
21208457
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Identification of functional differences in metabolic networks using comparative genomics and constraint-based models.

Hamilton JJ, Reed JL.

PLoS One. 2012;7(4):e34670. doi: 10.1371/journal.pone.0034670. Epub 2012 Apr 16.

PMID:
22666308
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli.

Lloyd AL, Rasko DA, Mobley HL.

J Bacteriol. 2007 May;189(9):3532-46. Epub 2007 Mar 9.

PMID:
17351047
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model.

Fong SS, Marciniak JY, Palsson BØ.

J Bacteriol. 2003 Nov;185(21):6400-8.

PMID:
14563875
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome evolution in major Escherichia coli O157:H7 lineages.

Zhang Y, Laing C, Steele M, Ziebell K, Johnson R, Benson AK, Taboada E, Gannon VP.

BMC Genomics. 2007 May 16;8:121.

PMID:
17506902
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Inferring ancient metabolism using ancestral core metabolic models of enterobacteria.

Baumler DJ, Ma B, Reed JL, Perna NT.

BMC Syst Biol. 2013 Jun 11;7:46. doi: 10.1186/1752-0509-7-46.

PMID:
23758866
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine.

Fabich AJ, Jones SA, Chowdhury FZ, Cernosek A, Anderson A, Smalley D, McHargue JW, Hightower GA, Smith JT, Autieri SM, Leatham MP, Lins JJ, Allen RL, Laux DC, Cohen PS, Conway T.

Infect Immun. 2008 Mar;76(3):1143-52. doi: 10.1128/IAI.01386-07. Epub 2008 Jan 7.

PMID:
18180286
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, Yokoyama K, Han CG, Ohtsubo E, Nakayama K, Murata T, Tanaka M, Tobe T, Iida T, Takami H, Honda T, Sasakawa C, Ogasawara N, Yasunaga T, Kuhara S, Shiba T, Hattori M, Shinagawa H.

DNA Res. 2001 Feb 28;8(1):11-22. Erratum in: DNA Res 2001 Apr 27;8(2):96.

PMID:
11258796
[PubMed - indexed for MEDLINE]
Free Article
14.

Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine.

Miranda RL, Conway T, Leatham MP, Chang DE, Norris WE, Allen JH, Stevenson SJ, Laux DC, Cohen PS.

Infect Immun. 2004 Mar;72(3):1666-76.

PMID:
14977974
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EP, Denamur E.

PLoS Genet. 2009 Jan;5(1):e1000344. doi: 10.1371/journal.pgen.1000344. Epub 2009 Jan 23.

PMID:
19165319
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome-derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry.

Taymaz-Nikerel H, Borujeni AE, Verheijen PJ, Heijnen JJ, van Gulik WM.

Biotechnol Bioeng. 2010 Oct 1;107(2):369-81. doi: 10.1002/bit.22802.

PMID:
20506321
[PubMed - indexed for MEDLINE]
17.

A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.

Weaver DS, Keseler IM, Mackie A, Paulsen IT, Karp PD.

BMC Syst Biol. 2014 Jun 30;8:79. doi: 10.1186/1752-0509-8-79.

PMID:
24974895
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities.

Edwards JS, Palsson BO.

Proc Natl Acad Sci U S A. 2000 May 9;97(10):5528-33.

PMID:
10805808
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains.

Brzuszkiewicz E, Brüggemann H, Liesegang H, Emmerth M, Olschläger T, Nagy G, Albermann K, Wagner C, Buchrieser C, Emody L, Gottschalk G, Hacker J, Dobrindt U.

Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12879-84. Epub 2006 Aug 15.

PMID:
16912116
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities.

Tzamali E, Poirazi P, Tollis IG, Reczko M.

BMC Syst Biol. 2011 Oct 18;5:167. doi: 10.1186/1752-0509-5-167.

PMID:
22008379
[PubMed - indexed for MEDLINE]
Free PMC Article

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